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[194044_at] Lectin C-type domain short and long forms, von Willebrand factor type A domain

Description F35C5.6 /REP_DB=WormBase Gene ID /WP=CE15947 /TR=O45444 /GB=CAB03058.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 19      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18874
1 2 3 4 range
A 22704.6
(1.2)
P 		25971.1
(2.3)
P 		28051.3
(3)
P 		10175.7
(-3)
P 		17876
B 19597.8
(-0)
P 		26481.8
(2.9)
P 		26672.3
(3)
P 		12554.4
(-3)
P 		14118
C 21672.7
(2.2)
P 		23337.3
(2.9)
P 		23492.9
(3)
P 		9177.8
(-3)
P 		14315
avr 21325
(1.2) 		25263.4
(2.7) 		26072.2
(3) 		10636
(-3) 		15436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11626
1 2 3 4 5 6 range
A 20895.8
(-1.3)
P 		20709.2
(-1.6)
P 		23543.1
(3)
P 		22973.4
(2.1)
P 		19884.2
(-3)
P 		19861.7
(-3)
P 		3681
B 21197.9
(-0.3)
P 		20559.9
(-0.6)
P 		27229.7
(3)
P 		22281.3
(0.3)
P 		18546.9
(-1.7)
P 		16094.9
(-3)
P 		11135
C 19537.8
(-0.5)
P 		20231
(-0.1)
P 		25138
(3)
P 		22967.3
(1.6)
P 		21403.5
(0.6)
P 		15604.1
(-3)
P 		9534
avr 20543.8
(-0.5) 		20500
(-0.6) 		25303.6
(3) 		22740.7
(1.1) 		19944.9
(-1) 		17186.9
(-3) 		8117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6777
1 2 3 4 range
A 8266.7
(3)
P 		5637.6
(0.7)
P 		7333.2
(2.2)
P 		1489.5
(-3)
P 		6777
B 6249.6
(2.5)
P 		6540.4
(3)
P 		6180.6
(2.4)
P 		2675.3
(-3)
P 		3865
C 7174.3
(2.1)
P 		6709.6
(1.7)
P 		8188
(3)
P 		1547.5
(-3)
P 		6641
avr 7230.2
(3) 		6295.9
(1.9) 		7233.9
(3) 		1904.1
(-3) 		5330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3683
1 2 3 4 5 6 range
A 3852
(-3)
P 		7365.2
(3)
P 		5127.2
(-0.8)
P 		5826.6
(0.4)
P 		6000.2
(0.7)
P 		4835.7
(-1.3)
P 		3513
B 7375.8
(2.4)
P 		6843.5
(0.5)
P 		6612.2
(-0.4)
P 		5901.6
(-3)
P 		7535.4
(3)
P 		6001.7
(-2.6)
P 		1634
C 7241.8
(3)
P 		6173.1
(0.6)
P 		6398
(1.1)
P 		4618.7
(-3)
P 		6925.9
(2.3)
P 		5223.6
(-1.6)
P 		2623
avr 6156.5
(0.3) 		6793.9
(2.9) 		6045.8
(-0.2) 		5449
(-2.6) 		6820.5
(3) 		5353.7
(-3) 		1467
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3109
Sequence Type Exemplar sequence
Representative Public ID F35C5.6 NCBI
Target Description F35C5.6 /REP_DB=WormBase Gene ID /WP=CE15947 /TR=O45444 /GB=CAB03058.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms, von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064342 NCBI Caenorhabditis elegans F35C5.6 (F35C5.6) mRNA, complete cds. 11/11 None
SNAP00000007547 ENSEMBL cdna:SNAP chromosome:CEL140:II:12895537:12897284:1 11/11 None
GENEFINDER00000007557 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12895356:12903194:1 11/11 None
F35C5.6.2 ENSEMBL cdna:known chromosome:CEL140:II:12895533:12897359:1 gene:F35C5.6 11/11 None
F35C5.6.1 ENSEMBL cdna:known chromosome:CEL140:II:12895535:12897359:1 gene:F35C5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12895533-12897281(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms, von Willebrand factor type A domain
Ensembl F35C5.6
Entrez Gene 174927 Entrez gene
SwissProt O45444 EMBL-EBI
WormBase CE15947 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03058 Hypothetical protein F35C5.6 [Caenorhabditis elegans] ref|NP_496743.1| F35C5.6 [Caenorhabditis elegans] 0.0
blast CAE60631 Hypothetical protein CBG04274 [Caenorhabditis briggsae] 0.0
blast CAB03056 Hypothetical protein F35C5.7 [Caenorhabditis elegans] ref|NP_496744.1| F35C5.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.8E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.8E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.1E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007557 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:194044_AT
ggacggagatgaggctcttctcgccggactcaccaacatcgcctcgccaaactacgcttt
cacctccaaggacttgaacttggttggagaacttcaaggagctgctcttcaaaccaactg
cttctgcccgaacttgtggacccaatacaagtcgaacttcgacgacgagaactcttacaa
atacggagtgtgcatccgccccgccaccatctcctcatcctggaccgctgccaagttcgc
gtgccagaacctcgccaagaacggattcctcgccgccgagtacgacggacagaagcacaa
cttcctcttcagagtcgcccagaacaacaccgccttccaagctccatacatctatcacat
cggattgagttatgtgaacggaggatggaattggcagcaaccagctggatacccactcaa
gccaatgagcggctactccaaatggaacccatcctatccaaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGGAGATGAGGCTCTTCTCGCC 258 525 645 Antisense
CGCTTTCACCTCCAAGGACTTGAAC 497 253 699 Antisense
TGCCCGAACTTGTGGACCCAATACA 590 257 769 Antisense
CAAATACGGAGTGTGCATCCGCCCC 699 191 822 Antisense
TCGCCGCCGAGTACGACGGACAGAA 410 599 914 Antisense
GAAGCACAACTTCCTCTTCAGAGTC 685 339 936 Antisense
TCTTCAGAGTCGCCCAGAACAACAC 669 615 950 Antisense
GCTCCATACATCTATCACATCGGAT 590 297 985 Antisense
ATACCCACTCAAGCCAATGAGCGGC 429 23 1053 Antisense
GAGCGGCTACTCCAAATGGAACCCA 586 385 1071 Antisense
AATGGAACCCATCCTATCCAAAGTC 682 161 1085 Antisense
Sequence Source Affymetrix Proprietary Database