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[194039_s_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)

Description W03C9.7 /REP_DB=WormBase Gene ID /WP=CE28097 /GEN=mex-1 /TR=Q9XTB3 /GB=CAA19470.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster 6grp_total > 98      4grp_total > 01      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 27.5
(-0.6)
A 		7.9
(-3)
A 		15.3
(-2.1)
A 		56.1
(3)
A 		48
B 12.5
(-3)
A 		13.6
(-2)
A 		18.9
(3)
A 		18.9
(3)
A 		6
C 25.5
(-2)
A 		17.2
(-3)
A 		31
(-1.3)
A 		65.8
(3)
A 		49
avr 21.8
(-1.4) 		12.9
(-3) 		21.7
(-1.4) 		46.9
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 630
1 2 3 4 5 6 range
A 8.9
(-3)
A 		15.7
(-2.9)
A 		13.2
(-3)
A 		145.2
(-1.7)
A 		445.5
(1.2)
P 		637.9
(3)
P 		629
B 18.3
(-3)
A 		20.4
(-3)
A 		45.9
(-2.7)
A 		137.3
(-1.7)
A 		431.3
(1.4)
P 		577.5
(3)
P 		559
C 8.1
(-3)
A 		12.2
(-3)
A 		78.8
(-2.2)
A 		88.6
(-2.1)
A 		449.7
(1.9)
P 		544
(3)
P 		536
avr 11.8
(-3) 		16.1
(-3) 		46
(-2.6) 		123.7
(-1.8) 		442.2
(1.5) 		586.5
(3) 		575
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10
(3)
A 		1.7
(-3)
A 		4
(-1.3)
A 		8.2
(1.7)
A 		8
B 4
(0.8)
A 		3.3
(-3)
A 		4.4
(3)
A 		4
(0.8)
A 		1
C 8.4
(0.4)
A 		4.9
(-3)
A 		10.8
(2.7)
A 		11.1
(3)
A 		6
avr 7.5
(2.6) 		3.3
(-3) 		6.4
(1.1) 		7.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 1.6
(-3)
A 		5.6
(-2.8)
A 		2.9
(-2.9)
A 		36.8
(-1.6)
A 		134.4
(2.2)
P 		155.3
(3)
P 		154
B 6.4
(-3)
A 		6.8
(-3)
A 		11.1
(-2.9)
A 		36.4
(-2.1)
A 		175.3
(1.8)
P 		215.4
(3)
P 		209
C 3
(-3)
A 		3.7
(-3)
A 		20.1
(-2.4)
A 		17.8
(-2.5)
A 		145.5
(1.8)
P 		182.1
(3)
P 		179
avr 3.7
(-3) 		5.4
(-2.9) 		11.4
(-2.7) 		30.3
(-2.1) 		151.7
(1.9) 		184.3
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194039_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3064
Sequence Type Exemplar sequence
Representative Public ID W03C9.7 NCBI
Target Description W03C9.7 /REP_DB=WormBase Gene ID /WP=CE28097 /GEN=mex-1 /TR=Q9XTB3 /GB=CAA19470.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064150 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-1) (mex-1) mRNA, complete cds. 11/11 A 
SNAP00000030313 ENSEMBL cdna:SNAP chromosome:CEL140:II:11968746:11971854:1 11/11 None
GENEFINDER00000030402 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11968757:11971854:1 11/11 None
W03C9.7.1 ENSEMBL cdna:known chromosome:CEL140:II:11968540:11972223:1 gene:W03C9.7 11/11 A 
W03C9.7.2 ENSEMBL cdna:known chromosome:CEL140:II:11968540:11972237:1 gene:W03C9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11968548-11971851(+) 95.83 100.0
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Gene Symbol mex-1
Ensembl W03C9.7
Entrez Gene 174836 Entrez gene
SwissProt Q9XTB3 EMBL-EBI
WormBase CE28097 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91362 Hypothetical protein W03C9.7 [Caenorhabditis elegans] emb|CAA19470.2| Hypothetical protein W03C9.7 [Caenorhabditis elegans] ref|NP_496551.1| Muscle EXcess family member (mex-1) [Caenorhabditis elegans] gb|AAC47486.1| MEX-1 [Caenorhabditis elegans] 0.0
blast CAE73409 Hypothetical protein CBG20851 [Caenorhabditis briggsae] 1.0E-143
blast CAE73409 Hypothetical protein CBG20851 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.5E-14
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 6.6E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.5E-14
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 6.6E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.5E-14
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 6.6E-13
Sequence
Target Sequence 
>C. ELEGANS:194039_S_AT
acaccagctccgaagattgtctatccatcgatgcaagttgtcaatattgaaatggcaact
ggtgacggacctaaaaggtctgacaatcatcattatcatcatcatcatcatcaacgtcgt
catattccggcaccaccatccaccggtccactgagctctctcattgatcaggccgactat
gaagcttctatggcaagcgggaaaatgttcggaaaaccagttagtccgcctttttcccgg
ataaaaccgtcaagttttgagaattttcaggagaacattcgcacctatggagccatgatc
cgcgccaacgaggagcacgtcgagcgtaatcagactggagttgtcaagaaggaacgggcg
acggttctaccgaaaagggatctttcactgattcgcgaggaggatacactgctcgtcgac
ggttctcatctgaatatgacgtcatcggcgattctgccagctcatcaaatcccttccacc
acgaccaccagcacatcatctccagtccaagaacagccgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCAGCTCCGAAGATTGTCTATC 658 109 931 Antisense
GATTGTCTATCCATCGATGCAAGTT 154 435 945 Antisense
TCATCAACGTCGTCATATTCCGGCA 559 619 1038 Antisense
GTCCACTGAGCTCTCTCATTGATCA 511 477 1076 Antisense
GATCAGGCCGACTATGAAGCTTCTA 23 421 1096 Antisense
AACATTCGCACCTATGGAGCCATGA 273 137 1204 Antisense
CGCCAACGAGGAGCACGTCGAGCGT 487 257 1233 Antisense
GATCTTTCACTGATTCGCGAGGAGG 213 419 1309 Antisense
CGAGGAGGATACACTGCTCGTCGAC 70 251 1326 Antisense
TCGTCGACGGTTCTCATCTGAATAT 203 603 1343 Antisense
ATCTCCAGTCCAAGAACAGCCGTGG 597 31 1428 Antisense
Sequence Source Affymetrix Proprietary Database