[Home] | [Total List]

[194038_s_at] peroxisomal membrane protein (PMP70, an ATP-binding transport protein)

Description C44B7.9 /REP_DB=WormBase Gene ID /WP=CE02547 /TR=Q18598 /GB=AAA68340.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxisomal membrane protein (PMP70, an ATP-binding transport protein)
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 87      6grp_total > 57      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3943
1 2 3 4 range
A 805.9
(-3)
P 		989.6
(-2.7)
P 		1004
(-2.6)
P 		4109.9
(3)
P 		3304
B 684.5
(-3)
P 		865.1
(-2.7)
P 		812.3
(-2.8)
P 		4627.4
(3)
P 		3943
C 734.7
(-3)
P 		950.8
(-2.6)
P 		1245.3
(-2.1)
P 		4159.7
(3)
P 		3425
avr 741.7
(-3) 		935.2
(-2.7) 		1020.5
(-2.5) 		4299
(3) 		3557

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1231
1 2 3 4 5 6 range
A 1475.7
(2.3)
P 		904.9
(-1.9)
P 		1324.4
(1.2)
P 		1022.5
(-1)
P 		757.6
(-3)
P 		1567.3
(3)
P 		810
B 1140.1
(-1.4)
P 		1071.5
(-1.8)
P 		1154.6
(-1.3)
P 		897.1
(-2.7)
P 		834.8
(-3)
P 		1988.8
(3)
P 		1154
C 1247
(-0.9)
P 		1364.5
(-0.3)
P 		1183.9
(-1.3)
P 		945.4
(-2.6)
P 		876.7
(-3)
P 		1954.3
(3)
P 		1078
avr 1287.6
(-0.3) 		1113.6
(-1.3) 		1221
(-0.6) 		955
(-2.2) 		823
(-3) 		1836.8
(3) 		1014
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 798
1 2 3 4 range
A 293.4
(-1.8)
P 		214.8
(-3)
P 		262.5
(-2.3)
P 		601.6
(3)
P 		387
B 218.3
(-2.8)
P 		213.7
(-2.8)
P 		188.2
(-3)
P 		986.1
(3)
P 		798
C 243.2
(-3)
P 		273.4
(-2.6)
P 		434
(-0.5)
P 		701.4
(3)
P 		458
avr 251.6
(-2.8) 		234
(-3) 		294.9
(-2.3) 		763
(3) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 272
(-1.3)
P 		321.8
(0.7)
P 		288.4
(-0.7)
P 		259.3
(-1.8)
P 		228.6
(-3)
P 		381.6
(3)
P 		153
B 396.7
(-1.1)
P 		356.7
(-1.6)
P 		280.4
(-2.5)
P 		237.6
(-3)
P 		339.2
(-1.8)
P 		741.6
(3)
P 		504
C 462.2
(0.5)
P 		416.4
(-0.1)
P 		301.3
(-1.6)
P 		190.1
(-3)
P 		283.7
(-1.8)
P 		654.2
(3)
P 		464
avr 377
(-0.6) 		365
(-0.8) 		290
(-2) 		229
(-3) 		283.8
(-2.1) 		592.5
(3) 		364
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194038_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5962
Sequence Type Exemplar sequence
Representative Public ID C44B7.9 NCBI
Target Description C44B7.9 /REP_DB=WormBase Gene ID /WP=CE02547 /TR=Q18598 /GB=AAA68340.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxisomal membrane protein (PMP70, an ATP-binding transport protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063007 NCBI Caenorhabditis elegans Peroxisomal Membrane Protein related family member (pmp-2) (pmp-2) mRNA, complete cds. 11/11 None
SNAP00000042326 ENSEMBL cdna:SNAP chromosome:CEL140:II:6884046:6887635:-1 11/11 None
GENEFINDER00000042333 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6884046:6887635:-1 11/11 None
C44B7.9 ENSEMBL cdna:known chromosome:CEL140:II:6883978:6887676:-1 gene:C44B7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6884041-6887631(-) 100.0 100.0
Public Domain and Genome References
Gene Title peroxisomal membrane protein (PMP70, an ATP-binding transport protein)
Gene Symbol pmp-2
Ensembl C44B7.9
Entrez Gene 174127 Entrez gene
SwissProt Q18598 EMBL-EBI
WormBase CE02547 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17280_AT peroxisomal ABC transporter (PXA1) at
ATH1-121501:252830_AT peroxisomal ABC transporter (PXA1) at
CANINE:1593921_AT similar to ATP-binding cassette, sub-family D, member 3 (70 kDa peroxisomal membrane protein) (PMP70) cfa
CANINE_2:CFA.13983.1.S1_S_AT similar to ATP-binding cassette, sub-family D, member 3 (70 kDa peroxisomal membrane protein) (PMP70) cfa
CANINE_2:CFA.13983.2.S1_AT similar to ATP-binding cassette, sub-family D, member 3 (70 kDa peroxisomal membrane protein) (PMP70) cfa
DROSOPHILA_2:1629413_AT dm
DROSGENOME1:145395_AT dm
CHICKEN:GGA.18455.1.S1_AT ATP-binding cassette, sub-family D (ALD), member 3 gga
HG-U133_PLUS_2:202850_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-U133A:202850_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-FOCUS:202850_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-U133A_2:202850_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HUGENEFL:X58528_S_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HUGENEFL:M81182_S_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
U133_X3P:G10947125_3P_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
U133_X3P:HS2.76781.2.S1_3P_S_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-U133_PLUS_2:1554878_A_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-U95AV2:37038_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
U133_X3P:HS2.375701.1.S1_3P_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-U133_PLUS_2:1564391_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
HG-U95E:75217_AT ATP-binding cassette, sub-family D (ALD), member 3 hs
MU11KSUBA:AA028386_AT ATP-binding cassette, sub-family D (ALD), member 3 mm
MU11KSUBB:MSA.1092.0_S_AT ATP-binding cassette, sub-family D (ALD), member 3 mm
MG-U74AV2:93045_AT ATP-binding cassette, sub-family D (ALD), member 3 mm
MOE430A:1416679_AT ATP-binding cassette, sub-family D (ALD), member 3 mm
MOUSE430A_2:1416679_AT ATP-binding cassette, sub-family D (ALD), member 3 mm
MOUSE430_2:1416679_AT ATP-binding cassette, sub-family D (ALD), member 3 mm
MOE430B:1443046_AT ATP-binding cassette, sub-family D (ALD), member 3, mRNA (cDNA clone MGC:6967 IMAGE:3154529) mm
MOUSE430_2:1443046_AT ATP-binding cassette, sub-family D (ALD), member 3, mRNA (cDNA clone MGC:6967 IMAGE:3154529) mm
MOE430B:1457991_AT ATP-binding cassette, sub-family D (ALD), member 3, mRNA (cDNA clone MGC:6967 IMAGE:3154529) mm
MOUSE430_2:1457991_AT ATP-binding cassette, sub-family D (ALD), member 3, mRNA (cDNA clone MGC:6967 IMAGE:3154529) mm
MU19KSUBC:TC40649_AT ATP-binding cassette, sub-family D (ALD), member 3, mRNA (cDNA clone MGC:6967 IMAGE:3154529) mm
RG-U34A:D90038_AT ATP-binding cassette, sub-family D (ALD), member 3 rn
RAE230A:1368057_AT ATP-binding cassette, sub-family D (ALD), member 3 rn
RAT230_2:1368057_AT ATP-binding cassette, sub-family D (ALD), member 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68340 Peroxisomal membrane protein related protein 2 [Caenorhabditis elegans] ref|NP_495408.1| Peroxisomal Membrane Protein related family member (pmp-2) [Caenorhabditis elegans] 0.0
blast CAE65985 Hypothetical protein CBG11176 [Caenorhabditis briggsae] 0.0
blast AAA68339 Peroxisomal membrane protein related protein 1 [Caenorhabditis elegans] ref|NP_495407.1| Peroxisomal Membrane Protein related family member (pmp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010509 EMBL-EBI ABC transporter, N-terminal 3.3E-44
Pfam IPR003439 EMBL-EBI ABC transporter 3.4E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495408.1 2 228-250,314-336
C44B7.9 2 228-250,314-336
SNAP00000042326 2 228-250,314-336
GENEFINDER00000042333 2 228-250,314-336
Sequence
Target Sequence 
>C. ELEGANS:194038_S_AT
taacttcgaagttccatctggtacaaatgtattggtttgtggaccaaatggatgtggaaa
gagctctctattccgtgtccttggagaactttggccacttttcggtggaactttgacaaa
acctgcaaaaggaaaattattctacgtaccacagaggccatacatgacacttggaactct
cagagatcaaattatttatccagatagaccacttgacatgattagaaaaggtgttagtga
ttcggatttagagcaaatgttagaaaatgttcaattaacacatattcttgaaagagaagg
tggatggtctgcagttcaagactggatggatgtactgtcaggaggagagaaacaaaggat
tgcgatggctcgattgttttaccacaaaccacaatttgcaattttggatgaatgtacttc
tgcagttagtgttgatgttgaaggagccatgtaccgtctttgccgcgaaaaaaacatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTTCGAAGTTCCATCTGGTACA 84 629 1395 Antisense
GGAAAGAGCTCTCTATTCCGTGTCC 428 527 1450 Antisense
GTGTCCTTGGAGAACTTTGGCCACT 281 487 1469 Antisense
TTGGCCACTTTTCGGTGGAACTTTG 669 675 1485 Antisense
ATTCTACGTACCACAGAGGCCATAC 411 5 1533 Antisense
ACAGAGGCCATACATGACACTTGGA 132 107 1545 Antisense
GACACTTGGAACTCTCAGAGATCAA 350 367 1560 Antisense
TATCCAGATAGACCACTTGACATGA 76 659 1591 Antisense
GGTGTTAGTGATTCGGATTTAGAGC 647 499 1624 Antisense
GTTGAAGGAGCCATGTACCGTCTTT 487 435 1831 Antisense
GTCTTTGCCGCGAAAAAAACATCAC 512 467 1850 Antisense
Sequence Source Affymetrix Proprietary Database