[Home] | [Total List]

[194037_at] ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop)

Description F19H8.3 /REP_DB=WormBase Gene ID /WP=CE15872 /TR=O45379 /GB=CAB07583.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ADP-ribosylation factors (Arf family) (contains ATP-GTP binding P-loop)
Cluster 6grp_total > 07      4grp_total > 39      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 416
1 2 3 4 range
A 468.2
(3)
P 		133.8
(-2.5)
A 		103.2
(-3)
A 		252.6
(-0.5)
A 		365
B 455.8
(3)
M 		190.5
(-2.6)
A 		169.5
(-3)
A 		278.9
(-0.7)
A 		286
C 519.5
(3)
P 		185.9
(-1.8)
A 		104.1
(-3)
A 		277.4
(-0.5)
A 		415
avr 481.2
(3) 		170.1
(-2.2) 		125.6
(-3) 		269.6
(-0.6) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 449.7
(3)
A 		208.2
(-1.3)
A 		130.5
(-2.7)
A 		138.1
(-2.6)
A 		112.9
(-3)
A 		175.6
(-1.9)
A 		337
B 350
(3)
P 		182.8
(-0.2)
A 		101.9
(-1.8)
A 		77.6
(-2.3)
A 		40.5
(-3)
A 		166.7
(-0.6)
A 		310
C 339.8
(3)
P 		166.6
(-1.6)
A 		139.3
(-2.3)
A 		114.7
(-3)
A 		126.9
(-2.7)
A 		154.7
(-1.9)
A 		225
avr 379.8
(3) 		185.9
(-1.1) 		123.9
(-2.4) 		110.1
(-2.7) 		93.4
(-3) 		165.7
(-1.5) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 170.5
(3)
P 		29.1
(-2.9)
A 		27
(-3)
A 		37
(-2.6)
A 		144
B 145.4
(3)
M 		47.1
(-2.6)
A 		39.3
(-3)
A 		59.4
(-1.9)
A 		106
C 172
(3)
P 		53.4
(-2.2)
A 		36.3
(-3)
A 		46.8
(-2.5)
A 		136
avr 162.6
(3) 		43.2
(-2.6) 		34.2
(-3) 		47.7
(-2.4) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 82.9
(3)
A 		74
(2)
A 		28.4
(-3)
A 		35
(-2.3)
A 		34.1
(-2.4)
A 		42.7
(-1.4)
A 		55
B 121.8
(3)
P 		60.8
(-0.5)
A 		24.7
(-2.5)
A 		20.6
(-2.8)
A 		16.4
(-3)
A 		62.2
(-0.4)
A 		105
C 126
(3)
P 		50.8
(-1.4)
A 		35.5
(-2.3)
A 		23.1
(-3)
A 		41
(-2)
A 		51.8
(-1.3)
A 		103
avr 110.2
(3) 		61.9
(-0.5) 		29.5
(-2.8) 		26.2
(-3) 		30.5
(-2.7) 		52.2
(-1.1) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3657
Sequence Type Exemplar sequence
Representative Public ID F19H8.3 NCBI
Target Description F19H8.3 /REP_DB=WormBase Gene ID /WP=CE15872 /TR=O45379 /GB=CAB07583.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ADP-ribosylation factors (Arf family) (contains ATP-GTP binding P-loop)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064636 NCBI Caenorhabditis elegans ARF-Like family member (arl-3) (arl-3) mRNA, complete cds. 11/11 None
SNAP00000003959 ENSEMBL cdna:SNAP chromosome:CEL140:II:14607103:14610303:1 11/11 None
GENEFINDER00000003970 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14607103:14610303:1 10/11 None
F19H8.3 ENSEMBL cdna:known chromosome:CEL140:II:14607103:14607942:1 gene:F19H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14607099-14607939(+) 100.0 100.0
Public Domain and Genome References
Gene Title ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop)
Gene Symbol arl-3
Ensembl F19H8.3
Entrez Gene 175121 Entrez gene
SwissProt O45379 EMBL-EBI
WormBase CE15872 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600619_S_AT similar to ADP-ribosylation factor-like 3 cfa
CANINE:1600618_AT similar to ADP-ribosylation factor-like 3 cfa
CANINE:1600292_AT similar to ADP-ribosylation factor-like 3 cfa
CANINE_2:CFA.10253.1.S1_S_AT similar to ADP-ribosylation factor-like 3 cfa
CANINE_2:CFA.10253.2.S1_AT similar to ADP-ribosylation factor-like 3 cfa
DROSOPHILA_2:1638592_AT dm
DROSGENOME1:150337_AT dm
CHICKEN:GGA.15959.1.S1_AT ADP-ribosylation factor-like 3 gga
HG-FOCUS:202641_AT ADP-ribosylation factor-like 3 hs
HG-U133A_2:202641_AT ADP-ribosylation factor-like 3 hs
HG-U133A:202641_AT ADP-ribosylation factor-like 3 hs
HG-U133_PLUS_2:202641_AT ADP-ribosylation factor-like 3 hs
HU35KSUBB:RC_F10907_AT ADP-ribosylation factor-like 3 hs
HUGENEFL:U07151_AT ADP-ribosylation factor-like 3 hs
U133_X3P:G4757773_3P_S_AT ADP-ribosylation factor-like 3 hs
U133_X3P:G4757773_3P_AT ADP-ribosylation factor-like 3 hs
U133_X3P:HS2.382777.1.A1_3P_AT ADP-ribosylation factor-like 3 hs
U133_X3P:HS.6220.0.S1_3P_AT ADP-ribosylation factor-like 3 hs
U133_X3P:202641_3P_AT ADP-ribosylation factor-like 3 hs
HG-U133_PLUS_2:1568590_AT ADP-ribosylation factor-like 3 hs
HG-U133A_2:213433_AT ADP-ribosylation factor-like 3 hs
HG-U133_PLUS_2:213433_AT ADP-ribosylation factor-like 3 hs
HG-U133A:213433_AT ADP-ribosylation factor-like 3 hs
HG-U95AV2:36544_AT ADP-ribosylation factor-like 3 hs
HG-U95AV2:41740_AT ADP-ribosylation factor-like 3 hs
MOUSE430A_2:1450706_A_AT ADP-ribosylation factor-like 3 mm
MOE430A:1450706_A_AT ADP-ribosylation factor-like 3 mm
MOUSE430_2:1450706_A_AT ADP-ribosylation factor-like 3 mm
MU11KSUBB:MSA.6658.0_F_AT ADP-ribosylation factor-like 3 mm
MU11KSUBB:MSA.24890.0_F_AT ADP-ribosylation factor-like 3 mm
MG-U74AV2:104135_AT ADP-ribosylation factor-like 3 mm
MU19KSUBB:TC34306_AT ADP-ribosylation factor-like 3 (Arl3), mRNA mm
MU19KSUBB:TC34306_G_AT ADP-ribosylation factor-like 3 (Arl3), mRNA mm
RG-U34A:RC_AA799478_AT ADP-ribosylation factor-like 3 rn
RG-U34A:U12568_AT ADP-ribosylation factor-like 3 rn
RG-U34B:RC_AI029644_F_AT ADP-ribosylation factor-like 3 rn
RAE230A:1367747_AT ADP-ribosylation factor-like 3 rn
RAT230_2:1367747_AT ADP-ribosylation factor-like 3 rn
RAE230A:1376514_AT ADP-ribosylation factor-like 3 rn
RAT230_2:1376514_AT ADP-ribosylation factor-like 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07584 Hypothetical protein F19H8.1 [Caenorhabditis elegans] emb|CAH18872.1| putative trehalose 6-phosphate synthase [Caenorhabditis elegans] ref|NP_497035.3| Trehalose 6-Phosphate Synthase family member (tps-2) [Caenorhabditis elegans] 1.0E-172
blast CAD54507 trehalose-6-phosphate synthase [Caenorhabditis elegans] 1.0E-165
blast CAE65906 Hypothetical protein CBG11073 [Caenorhabditis briggsae] 1.0E-163
blast CAD54507 trehalose-6-phosphate synthase [Caenorhabditis elegans] 1.0E-146
blast CAB07584 Hypothetical protein F19H8.1 [Caenorhabditis elegans] emb|CAH18872.1| putative trehalose 6-phosphate synthase [Caenorhabditis elegans] ref|NP_497035.3| Trehalose 6-Phosphate Synthase family member (tps-2) [Caenorhabditis elegans] 1.0E-146
blast CAE65906 Hypothetical protein CBG11073 [Caenorhabditis briggsae] 1.0E-136
blast CAB07583 Hypothetical protein F19H8.3 [Caenorhabditis elegans] ref|NP_497037.1| ARF-Like family member (arl-3) [Caenorhabditis elegans] sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 1.0E-100
blast CAE65907 Hypothetical protein CBG11074 [Caenorhabditis briggsae] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 3.3E-91
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.4E-75
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.5E-93
Sequence
Target Sequence 
>C. ELEGANS:194037_AT
gaaatcattcaagtcacccagtggccgcgaaatccgaatccttctactaggactcgacaa
cgccggtaagacgacaatactgaagcagctgtcctctgaagatgttcaacacgtcacacc
gaccaagggattcaacgtgaagactgtcgccgctatgggtgacatacgtctaaacgtctg
ggacatcggaggtcagcgatcgattcgtccgtattggtccaactactacgaaaatatcga
cacactgatcttcgtgatcgatagtaatgacaagaagcggttcgacgagatgaacattga
gctcggcgaactgcttgacgaggagaagcttcgcaaggttccggtgctcatatttgctaa
taaacaggatcttgtcacagcagcgtcatcagaggaaattaccagaaaactaaacctgga
ccttctccgcgaccgcacttggcacattcaagcctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCATTCAAGTCACCCAGTGGC 8 363 33 Antisense
CGCGAAATCCGAATCCTTCTACTAG 138 251 58 Antisense
TAGGACTCGACAACGCCGGTAAGAC 650 649 80 Antisense
TACTGAAGCAGCTGTCCTCTGAAGA 397 647 110 Antisense
ACACGTCACACCGACCAAGGGATTC 159 109 141 Antisense
GACTGTCGCCGCTATGGGTGACATA 647 375 174 Antisense
TCGATTCGTCCGTATTGGTCCAACT 452 603 232 Antisense
TATCGACACACTGATCTTCGTGATC 145 659 267 Antisense
TTGAGCTCGGCGAACTGCTTGACGA 710 705 329 Antisense
AACAGGATCTTGTCACAGCAGCGTC 498 135 395 Antisense
CGCACTTGGCACATTCAAGCCTGCT 467 253 466 Antisense
Sequence Source Affymetrix Proprietary Database