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[194034_at] LRR (leucine-rich repeats); FSHR (follicle stimulating hormone receptor)

Description K03A1.2 /REP_DB=WormBase Gene ID /WP=CE04710 /TR=Q21164 /GB=AAA83325.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=LRR (leucine-rich repeats); FSHR (follicle stimulating hormone receptor)
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 58      6grp_total > 85      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1614
1 2 3 4 range
A 2083
(1)
P 		1155.3
(-3)
P 		1724.9
(-0.5)
P 		2532.5
(3)
P 		1377
B 2140.7
(0.6)
P 		1285.2
(-3)
P 		1371.4
(-2.6)
P 		2726.6
(3)
P 		1441
C 1832.8
(-0.2)
P 		1112.4
(-3)
P 		1595.6
(-1.1)
P 		2663.6
(3)
P 		1551
avr 2018.8
(0.4) 		1184.3
(-3) 		1564
(-1.4) 		2640.9
(3) 		1457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2259
1 2 3 4 5 6 range
A 1878.3
(-2.5)
P 		1726.1
(-3)
P 		2265.5
(-1.3)
P 		2712.7
(0.1)
P 		3609.1
(3)
P 		2912.2
(0.8)
P 		1883
B 2043.3
(-2.6)
P 		1940.2
(-3)
P 		1953.2
(-2.9)
P 		3050.9
(1.6)
P 		3387.5
(3)
P 		3296.1
(2.6)
P 		1447
C 1349.8
(-3)
P 		2088.1
(-0.8)
P 		2365.3
(0.1)
P 		3339.7
(3)
P 		2359.6
(0)
P 		3253.2
(2.7)
P 		1990
avr 1757.1
(-3) 		1918.1
(-2.3) 		2194.7
(-1.1) 		3034.4
(2.5) 		3118.7
(2.8) 		3153.8
(3) 		1397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 758.4
(3)
P 		250.8
(-3)
P 		450.9
(-0.6)
P 		370.7
(-1.6)
P 		508
B 682.6
(3)
P 		317.4
(-3)
P 		317.8
(-3)
P 		581.1
(1.3)
P 		365
C 606.7
(3)
P 		319.8
(-3)
P 		556.1
(1.9)
P 		449.1
(-0.3)
P 		287
avr 682.6
(3) 		296
(-3) 		441.6
(-0.7) 		467
(-0.3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1030
1 2 3 4 5 6 range
A 346.3
(-3)
P 		613.9
(-0.8)
P 		493.4
(-1.8)
P 		688
(-0.2)
P 		1089.1
(3)
P 		709
(-0.1)
P 		743
B 711
(-1.4)
P 		645.8
(-1.9)
P 		474.3
(-3)
P 		808.1
(-0.8)
P 		1376.3
(3)
P 		1229.1
(2)
P 		902
C 500.3
(-3)
P 		637.1
(-1.6)
P 		602
(-2)
P 		671.6
(-1.3)
P 		763.5
(-0.3)
P 		1089
(3)
P 		589
avr 519.2
(-3) 		632.3
(-1.8) 		523.2
(-3) 		722.6
(-0.8) 		1076.3
(3) 		1009
(2.3) 		557
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16427
Sequence Type Exemplar sequence
Representative Public ID K03A1.2 NCBI
Target Description K03A1.2 /REP_DB=WormBase Gene ID /WP=CE04710 /TR=Q21164 /GB=AAA83325.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=LRR (leucine-rich repeats); FSHR (follicle stimulating hormone receptor)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076826 NCBI Caenorhabditis elegans K03A1.2 (K03A1.2) mRNA, complete cds. 11/11 None
SNAP00000013864 ENSEMBL cdna:SNAP chromosome:CEL140:X:7292084:7295750:1 11/11 None
GENEFINDER00000013871 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7292084:7295750:1 11/11 None
K03A1.2.2 ENSEMBL cdna:known chromosome:CEL140:X:7292082:7295987:1 gene:K03A1.2 11/11 None
K03A1.2.1 ENSEMBL cdna:known chromosome:CEL140:X:7292084:7295987:1 gene:K03A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7292082-7295749(+) 100.0 100.0
Public Domain and Genome References
Gene Title LRR (leucine-rich repeats); FSHR (follicle stimulating hormone receptor)
Ensembl K03A1.2
Entrez Gene 180991 Entrez gene
SwissProt Q21164 EMBL-EBI
WormBase CE30088 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639478_AT dm
DROSOPHILA_2:1636630_S_AT dm
DROSGENOME1:142766_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83325 Hypothetical protein K03A1.2 [Caenorhabditis elegans] ref|NP_509227.2| K03A1.2 [Caenorhabditis elegans] 0.0
blast CAE65868 Hypothetical protein CBG11012 [Caenorhabditis briggsae] 0.0
blast CAE65868 Hypothetical protein CBG11012 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 0.0020
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.031
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 2.0E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.015
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.06
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 0.0020
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.031
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 2.0E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.06
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 0.0020
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.031
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 2.0E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.015
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.06
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509227.2 1 522-544
K03A1.2.2 1 522-544
K03A1.2.1 1 522-544
SNAP00000013864 1 475-497
GENEFINDER00000013871 1 569-591
Sequence
Target Sequence 
>C. ELEGANS:194034_AT
tcaaccaggacacaagtcggccgctattacatcattacaaatacataattcgaacattag
tacaatcagcgagcacatggtagactacgacaatcttaaaactttccaagtcggcggaaa
cccatggaattgcaattgcgatacccagttcatgttggaagagaagttcgcatttaagca
agattctgttgcgccaaaatgcacatcccccgctggactcaatggccgtcttttggtaac
tgtaagagcgtctgatgcttgcgaggatgctcgattccttggaagatctggccgattcag
ttctgttctcggactcgcattactggttggcttcattgcaatcggaacttactacatggt
ttcgtctggaaagcttgagagacttgttcgaagagtgaggaaggaaccagaagttactta
caccaatttgcaaaatgccggcgaggactttgctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCAGGACACAAGTCGGCCGCT 591 631 1209 Antisense
TCGGCCGCTATTACATCATTACAAA 579 607 1225 Antisense
GTCGGCGGAAACCCATGGAATTGCA 363 471 1318 Antisense
GCAATTGCGATACCCAGTTCATGTT 546 321 1340 Antisense
TGGACTCAATGGCCGTCTTTTGGTA 513 545 1422 Antisense
GCGTCTGATGCTTGCGAGGATGCTC 558 291 1456 Antisense
AGATCTGGCCGATTCAGTTCTGTTC 122 67 1492 Antisense
TCTCGGACTCGCATTACTGGTTGGC 501 609 1515 Antisense
GGTTGGCTTCATTGCAATCGGAACT 591 507 1533 Antisense
GGAACTTACTACATGGTTTCGTCTG 161 527 1552 Antisense
AAAATGCCGGCGAGGACTTTGCTCT 319 131 1640 Antisense
Sequence Source Affymetrix Proprietary Database