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[194032_at] vesicle-associated membrane protein/synaptobrevin binding protein (weak)

Description F54H5.3 /REP_DB=WormBase Gene ID /WP=CE01966 /TR=P91330 /GB=AAB38093.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=vesicle-associated membrane protein-synaptobrevin binding protein (weak)
Cluster 6grp_total > 89      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 39.4
(-2.4)
A 		65.4
(3)
A 		36.4
(-3)
A 		57.2
(1.3)
A 		29
B 26.4
(-2.9)
A 		64.2
(3)
A 		61.7
(2.6)
A 		25.6
(-3)
A 		39
C 55.7
(3)
A 		39.7
(-1.3)
A 		43.9
(-0.1)
A 		33.2
(-3)
A 		23
avr 40.5
(-2.4) 		56.4
(3) 		47.3
(-0.1) 		38.7
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 53.9
(0.4)
A 		8.2
(-2.7)
A 		57.6
(0.7)
A 		4.3
(-3)
A 		90.7
(3)
A 		76.1
(2)
A 		86
B 34.4
(-3)
A 		66.3
(3)
A 		41.8
(-1.6)
A 		42.1
(-1.6)
A 		55.4
(0.9)
A 		53.2
(0.5)
A 		32
C 14.3
(-3)
A 		57
(1.7)
A 		33.9
(-0.8)
A 		19.9
(-2.4)
A 		32.1
(-1)
A 		68.5
(3)
A 		54
avr 34.2
(-1.3) 		43.8
(-0) 		44.4
(0.1) 		22.1
(-3) 		59.4
(2.1) 		65.9
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.3
(3)
A 		14.2
(2.9)
A 		9.5
(-1.9)
A 		8.4
(-3)
A 		6
B 8.4
(-1.3)
A 		15.9
(3)
A 		14.3
(2.1)
A 		5.5
(-3)
A 		10
C 18.4
(3)
A 		11.4
(-0.3)
A 		15.3
(1.5)
A 		5.6
(-3)
A 		13
avr 13.7
(2.9) 		13.8
(3) 		13
(2.3) 		6.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.9
(-1)
A 		2.9
(-2.6)
A 		12.5
(-0.4)
A 		1.1
(-3)
A 		27.4
(3)
A 		18.5
(1)
A 		26
B 12
(-2.1)
A 		22.1
(2.8)
A 		10.1
(-3)
A 		11.1
(-2.5)
A 		22.5
(3)
A 		19.8
(1.7)
A 		12
C 5.3
(-2.6)
A 		17.4
(1.3)
A 		8.6
(-1.5)
A 		4
(-3)
A 		10.4
(-1)
A 		22.9
(3)
A 		19
avr 9.1
(-1.5) 		14.1
(0.5) 		10.4
(-1) 		5.4
(-3) 		20.1
(2.9) 		20.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4681
Sequence Type Exemplar sequence
Representative Public ID F54H5.3 NCBI
Target Description F54H5.3 /REP_DB=WormBase Gene ID /WP=CE01966 /TR=P91330 /GB=AAB38093.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=vesicle-associated membrane protein-synaptobrevin binding protein (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062944 NCBI Caenorhabditis elegans F54H5.3 (F54H5.3) mRNA, complete cds. 11/11 None
SNAP00000010663 ENSEMBL cdna:SNAP chromosome:CEL140:II:6622133:6623378:1 11/11 None
GENEFINDER00000010668 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6622133:6623378:1 11/11 None
F54H5.3 ENSEMBL cdna:known chromosome:CEL140:II:6622133:6623378:1 gene:F54H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6622129-6623375(+) 100.0 100.0
Public Domain and Genome References
Gene Title vesicle-associated membrane protein/synaptobrevin binding protein (weak)
Ensembl F54H5.3
Entrez Gene 186264 Entrez gene
SwissProt P91330 EMBL-EBI
WormBase CE01966 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB38093 Hypothetical protein F54H5.3 [Caenorhabditis elegans] ref|NP_495345.1| F54H5.3 [Caenorhabditis elegans] 1.0E-146
blast CAE60658 Hypothetical protein CBG04310 [Caenorhabditis briggsae] 6.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.1E-24
Sequence
Target Sequence 
>C. ELEGANS:194032_AT
tatcgttcaagcaatgccttctcccggagactttgctgatcggaagttcatctggaagca
accaaattttcttggaatttttacaaatactcgtgttaagacaatgagaccggctcaatc
tttgccgaaatcgaatccgaaaagtccagcaaaggtttcaaccccaacagactctggcat
gtcctcgccggtagcttcatctgagtcattggtaactccgtctgttcctagttggtccaa
atcaccgtcatctccaattgatcatggaaaatttgcggaaaacatcaatgatctgagtgt
tcaagtaaaaaaagcaattgatgagaagaatacacgtacgagtgaaatggtttcagttgt
caatcagattaaagcagttgaagtggatctagacaggcaggcccaattggtgaatgaatt
gagtgaaagagttaagagaggagaaattcaatactcgaatcttgtgatgcatgaacgaag
tctgagagttgagctgggtcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGTTCAAGCAATGCCTTCTCCC 321 657 315 Antisense
TTCTCCCGGAGACTTTGCTGATCGG 399 689 333 Antisense
GCTCAATCTTTGCCGAAATCGAATC 103 303 427 Antisense
TTCAACCCCAACAGACTCTGGCATG 95 685 471 Antisense
CCGGTAGCTTCATCTGAGTCATTGG 655 265 502 Antisense
GAGTCATTGGTAACTCCGTCTGTTC 705 397 517 Antisense
CGTCTGTTCCTAGTTGGTCCAAATC 323 245 533 Antisense
AAATCACCGTCATCTCCAATTGATC 581 117 553 Antisense
GAAGTGGATCTAGACAGGCAGGCCC 185 335 694 Antisense
GACAGGCAGGCCCAATTGGTGAATG 467 367 706 Antisense
AGTCTGAGAGTTGAGCTGGGTCGTC 269 61 793 Antisense
Sequence Source Affymetrix Proprietary Database