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[194026_at]

Description W04G5.6 /REP_DB=WormBase Gene ID /WP=CE28099 /GEN=kin-23 /TR=O18174 /GB=CAB07686.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily) (4 domains)
Cluster 6grp_total > 48      4grp_total > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 7.2
(-3)
A 		8.6
(-2.1)
A 		11.2
(-0.4)
A 		16.3
(3)
A 		9
B 44.7
(2.2)
A 		51.1
(3)
A 		4.9
(-3)
A 		13.7
(-1.9)
A 		46
C 47.9
(3)
A 		6.5
(-2.7)
A 		4.3
(-3)
A 		4.7
(-2.9)
A 		44
avr 33.3
(3) 		22.1
(0.5) 		6.8
(-3) 		11.6
(-1.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.5
(-1.7)
A 		5.9
(-1.9)
A 		3.2
(-3)
A 		18.1
(3)
A 		5.8
(-2)
A 		15.8
(2.1)
A 		15
B 18.2
(0.8)
A 		9.3
(-1.3)
A 		6.9
(-1.9)
A 		17.9
(0.8)
A 		2.5
(-3)
A 		27.1
(3)
A 		25
C 13.8
(-0.3)
A 		24.6
(3)
A 		5
(-3)
A 		5.1
(-3)
A 		19.3
(1.4)
A 		7.7
(-2.2)
A 		20
avr 12.8
(0.9) 		13.3
(1.2) 		5
(-3) 		13.7
(1.4) 		9.2
(-0.9) 		16.9
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(1.2)
A 		1.9
(-3)
A 		2.9
(3)
A 		2.4
(0)
A 		1
B 14.2
(3)
A 		12.6
(2.3)
A 		1.1
(-3)
A 		2.9
(-2.2)
A 		13
C 15.9
(3)
A 		1.9
(-2.6)
A 		1.5
(-2.7)
A 		0.8
(-3)
A 		15
avr 10.9
(3) 		5.5
(-0.6) 		1.8
(-3) 		2
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.2
(-2.2)
A 		2.1
(-0.8)
A 		0.7
(-3)
A 		4.6
(3)
A 		1.8
(-1.3)
A 		3.8
(1.8)
A 		4
B 6.3
(0.5)
A 		3.1
(-1.6)
A 		1.7
(-2.5)
A 		4.7
(-0.6)
A 		1
(-3)
A 		10.1
(3)
A 		9
C 5.1
(0.8)
A 		7.5
(3)
A 		1.3
(-2.7)
A 		1
(-3)
A 		6.2
(1.8)
A 		2.6
(-1.5)
A 		7
avr 4.2
(1.2) 		4.2
(1.2) 		1.2
(-3) 		3.4
(0.1) 		3
(-0.5) 		5.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.491
Sequence Type Exemplar sequence
Representative Public ID W04G5.6 NCBI
Target Description W04G5.6 /REP_DB=WormBase Gene ID /WP=CE28099 /GEN=kin-23 /TR=O18174 /GB=CAB07686.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily) (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060568 NCBI Caenorhabditis elegans W04G5.10 (W04G5.10) mRNA, complete cds. 11/11 None
W04G5.10 ENSEMBL cdna:known chromosome:CEL140:I:11646693:11648536:-1 gene:W04G5.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044251 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11646623-11650259(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G5.10
Entrez Gene 173049 Entrez gene
SwissProt Q95ZK1 EMBL-EBI
WormBase CE27218 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC42353 Hypothetical protein W04G5.10 [Caenorhabditis elegans] ref|NP_492969.1| W04G5.10 [Caenorhabditis elegans] 0.0
blast AAF00547 putative tyrosine kinase receptor W04G5.6B [Caenorhabditis elegans] 1.0E-150
blast CAB07686 Hypothetical protein W04G5.6 [Caenorhabditis elegans] ref|NP_492970.1| protein KINase family member (kin-23) [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492969.1 1 7-29
W04G5.10 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:194026_AT
ttggaacgagtgccgtgtgtccatcgcgatttggctttgcgaaatgttcttattaaaaac
aatggagttctaaaaatagcagattttggattggccagacgtcatgataaaaaagattat
tatagaacaaaaacaacggacaccgctcttccaataaagtggttggcccccgagtgtttc
gaagaagaagaagaaaaaataagatttgattcgaaatcggatgtttggtcttatggtgtc
tgcctttatgaaatattctccctgggagaaagtccgtacaacgaattggattccaacaat
tttgcatttttgcaagttttggctgatttccttcgaaagggaaatacgctttccgaaccg
gagcattgcgctcctaagatgtactactttatgaagtcttgctggaatctgattccggaa
gaacggccatctttcaccgcctgcactaacttctctcgtacccagcttaatcagttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAACGAGTGCCGTGTGTCCATC 436 709 1879 Antisense
GTGTCCATCGCGATTTGGCTTTGCG 563 485 1895 Antisense
TTGGATTGGCCAGACGTCATGATAA 653 701 1964 Antisense
GGACACCGCTCTTCCAATAAAGTGG 650 521 2016 Antisense
TGGCCCCCGAGTGTTTCGAAGAAGA 372 545 2042 Antisense
GGTCTTATGGTGTCTGCCTTTATGA 494 503 2105 Antisense
GCAAGTTTTGGCTGATTTCCTTCGA 376 321 2190 Antisense
AATACGCTTTCCGAACCGGAGCATT 222 171 2221 Antisense
GAGCATTGCGCTCCTAAGATGTACT 399 389 2239 Antisense
GATTCCGGAAGAACGGCCATCTTTC 311 433 2289 Antisense
CTCGTACCCAGCTTAATCAGTTGTC 415 231 2333 Antisense
Sequence Source Affymetrix Proprietary Database