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[194015_at]

Description ZK1151.1 /REP_DB=WormBase Gene ID /WP=CE25734 /TR=O18290 /GB=CAB07724.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Src homology domain 3, Actinin-type actin-binding domain containing proteins
Cluster 6grp_total > 10      4grp_total > 45      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 98.6
(1.8)
A 		122.9
(3)
A 		13.6
(-2.6)
A 		5.8
(-3)
A 		117
B 125.7
(3)
A 		41.5
(-1.2)
A 		6.4
(-2.9)
A 		4.6
(-3)
A 		121
C 75.4
(2.6)
A 		79.5
(3)
A 		40.7
(-0.5)
A 		12.7
(-3)
A 		67
avr 99.9
(3) 		81.3
(1.8) 		20.2
(-2.2) 		7.7
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 10.7
(-2.7)
A 		132.4
(3)
A 		5.4
(-3)
A 		26.3
(-2)
A 		4.9
(-3)
A 		44.3
(-1.1)
A 		128
B 5.1
(-2.1)
A 		4.8
(-2.3)
A 		15.7
(3)
A 		3.5
(-2.9)
A 		8.1
(-0.7)
A 		3.3
(-3)
A 		12
C 18.4
(-1.3)
A 		7
(-2.7)
A 		53.3
(3)
A 		4.4
(-3)
A 		6
(-2.8)
A 		7.1
(-2.7)
A 		49
avr 11.4
(-2.3) 		48.1
(3) 		24.8
(-0.3) 		11.4
(-2.3) 		6.3
(-3) 		18.2
(-1.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 35.9
(3)
A 		26.7
(1.4)
A 		3.6
(-2.5)
A 		0.8
(-3)
A 		35
B 40.1
(3)
A 		10.2
(-1.6)
A 		1.5
(-2.9)
A 		1
(-3)
A 		39
C 24.9
(3)
A 		22.9
(2.5)
A 		14.2
(0.2)
A 		2.1
(-3)
A 		23
avr 33.6
(3) 		19.9
(0.5) 		6.4
(-2.1) 		1.3
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2
(-2.9)
A 		47.1
(3)
A 		1.2
(-3)
A 		6.7
(-2.3)
A 		1.5
(-3)
A 		10.8
(-1.7)
A 		46
B 1.8
(-1.1)
A 		1.6
(-1.6)
A 		3.8
(3)
A 		0.9
(-3)
A 		3.3
(2)
A 		1.2
(-2.4)
A 		3
C 6.8
(-0.2)
A 		2.1
(-2.4)
A 		13.6
(3)
A 		0.9
(-3)
A 		1.9
(-2.5)
A 		2.4
(-2.3)
A 		13
avr 3.5
(-2.5) 		16.9
(3) 		6.2
(-1.4) 		2.8
(-2.8) 		2.2
(-3) 		4.8
(-1.9) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1591
Sequence Type Exemplar sequence
Representative Public ID ZK1151.1 NCBI
Target Description ZK1151.1 /REP_DB=WormBase Gene ID /WP=CE25734 /TR=O18290 /GB=CAB07724.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Src homology domain 3, Actinin-type actin-binding domain containing proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026683(11), NM_001026684(11), NM_001026688(11), NM_001026682(11), NM_001026686(11), NM_001026687(11), NM_001026685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026683 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026684 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026688 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026682 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026686 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026687 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
NM_001026685 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-10) (vab-10) mRNA, complete cds. 11/11 None
ZK1151.1b ENSEMBL cdna:known chromosome:CEL140:I:11755550:11800240:-1 gene:ZK1151.1 11/11 A 
ZK1151.1c ENSEMBL cdna:known chromosome:CEL140:I:11755565:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1g ENSEMBL cdna:known chromosome:CEL140:I:11755884:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1a ENSEMBL cdna:known chromosome:CEL140:I:11772417:11800240:-1 gene:ZK1151.1 11/11 A 
ZK1151.1e ENSEMBL cdna:known chromosome:CEL140:I:11772438:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1d ENSEMBL cdna:known chromosome:CEL140:I:11772959:11800188:-1 gene:ZK1151.1 11/11 A 
ZK1151.1f ENSEMBL cdna:known chromosome:CEL140:I:11772959:11800188:-1 gene:ZK1151.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11782184-11797515(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1151.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD90183 Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD90187.2| Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD90176.2| Hypothetical protein ZK1151.1b [Caenorhabditis elegans] emb|CAD44324.1| VAB-10B protein [Caenorhabditis elegans] ref|NP_001021854.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAD90184 Hypothetical protein ZK1151.1c [Caenorhabditis elegans] emb|CAD90188.2| Hypothetical protein ZK1151.1c [Caenorhabditis elegans] emb|CAD90177.2| Hypothetical protein ZK1151.1c [Caenorhabditis elegans] ref|NP_001021855.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast CAD44516 VAB-10B protein [Caenorhabditis elegans] 0.0
blast CAH04759 Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04743.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04711.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] ref|NP_001021859.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
blast T26964 hypothetical protein ZK1151.2b - Caenorhabditis elegans 0.0
blast CAH04740 Hypothetical protein ZK1151.1d [Caenorhabditis elegans] emb|CAH04708.1| Hypothetical protein ZK1151.1d [Caenorhabditis elegans] ref|NP_001021856.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 6.09999990463257
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 5.80000019073486
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.349999994039536
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.340000003576279
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.280000001192093
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.25
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.69999980926514
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.60000002384186
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.59999990463257
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.5
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 3.40000009536743
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.970000028610229
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 5.8E-34
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-34
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.12
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.2E-5
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.027
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0014
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.5E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.2E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.4E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.16
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.4E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.0E-7
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.0E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.12
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.2E-5
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.027
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0014
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.5E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.1E-6
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.2E-18
Pfam IPR002017 EMBL-EBI Spectrin repeat 4.4E-7
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.16
Pfam IPR002017 EMBL-EBI Spectrin repeat 5.4E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.0E-7
Pfam IPR003108 EMBL-EBI Growth-arrest-specific protein 2 5.0E-37
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 3.4E-18
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.6E-34
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.45
Pfam IPR002017 EMBL-EBI Spectrin repeat 2.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.067
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.1E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.0011
Sequence
Target Sequence 
>C. ELEGANS:194015_AT
aacaggaatgttgcacttctccgtcaacacgtctcgagaacccgtattaacgagggacac
catcctgacgttgacgccatcgaagacgaggtgcaaaagctgaatgtccgctgggaaaat
gtgaactcccaaatagcttctcgcttgctcgccgtcgaaagtgccctccaaatccaaatg
gtctaccgatccgagtacgagactgaaatgtcgtggttggacactgtcgaggagacgatc
aatcgtctgagaaagccagaagagctccgccctgagcaataccaacagcaactcgacatg
ctcatcgccgaatacacaaaccttcaagagcacactcaagcgattgagcacgtgaacaag
gagggtggtcggttcattcatgaagccaagattttcgacgcgaaactcggacagtactct
gatggaattgttggaatccacggacccggtatcaagtcggaattccgtcgtactaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGGAATGTTGCACTTCTCCGTC 17 137 3604 Antisense
TCAACACGTCTCGAGAACCCGTATT 590 629 3627 Antisense
TTAACGAGGGACACCATCCTGACGT 607 637 3650 Antisense
ATCCTGACGTTGACGCCATCGAAGA 88 39 3665 Antisense
TGTGAACTCCCAAATAGCTTCTCGC 238 557 3723 Antisense
ATCCAAATGGTCTACCGATCCGAGT 659 37 3775 Antisense
TCCGCCCTGAGCAATACCAACAGCA 701 595 3869 Antisense
TCGACATGCTCATCGCCGAATACAC 318 601 3896 Antisense
CAAGGAGGGTGGTCGGTTCATTCAT 595 183 3960 Antisense
TGTTGGAATCCACGGACCCGGTATC 681 561 4032 Antisense
GTCGGAATTCCGTCGTACTAAGCCA 36 471 4059 Antisense
Sequence Source Affymetrix Proprietary Database