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[194010_at] reverse transcriptase and Epstein-Barr virus large tegument protein

Description T14G12.5 /REP_DB=WormBase Gene ID /WP=CE04966 /TR=Q22511 /GB=AAA82437.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase and Epstein-Barr virus large tegument protein
Cluster 6grp_total > 90      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 2
(-3)
A 		7
(-2.7)
A 		6.1
(-2.7)
A 		95
(3)
P 		93
B 12.1
(-2.9)
A 		16.4
(-2.5)
A 		11.4
(-3)
A 		67.8
(3)
A 		56
C 13.3
(-2.7)
A 		10.4
(-2.9)
A 		8.3
(-3)
A 		109.3
(3)
A 		101
avr 9.1
(-3) 		11.3
(-2.8) 		8.6
(-3) 		90.7
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 14
(0.6)
A 		6.1
(-3)
A 		15
(1)
A 		9.5
(-1.5)
A 		7.7
(-2.3)
A 		19.3
(3)
A 		13
B 19.9
(-0.4)
A 		9.9
(-2.1)
A 		6.2
(-2.8)
A 		39.2
(3)
A 		22.6
(0.1)
A 		5
(-3)
A 		34
C 5.5
(-2.4)
A 		32.7
(3)
A 		6.2
(-2.3)
A 		14.8
(-0.6)
A 		2.7
(-3)
A 		19
(0.3)
A 		30
avr 13.1
(-1) 		16.2
(0.5) 		9.1
(-3) 		21.2
(3) 		11
(-2.1) 		14.4
(-0.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.7
(-3)
A 		1.5
(-2.6)
A 		1.6
(-2.6)
A 		13.9
(3)
P 		13
B 3.8
(-2.4)
A 		4.1
(-2.2)
A 		2.6
(-3)
A 		14.4
(3)
A 		12
C 4.4
(-2.4)
A 		3
(-3)
A 		2.9
(-3)
A 		18.4
(3)
A 		16
avr 3
(-2.7) 		2.9
(-2.8) 		2.4
(-3) 		15.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.6
(-2)
A 		2.2
(-3)
A 		3.3
(-0.4)
A 		2.4
(-2.5)
A 		2.3
(-2.8)
A 		4.7
(3)
A 		3
B 6.9
(0.6)
A 		3.3
(-1.8)
A 		1.5
(-3)
A 		10.4
(3)
A 		9.2
(2.2)
A 		1.9
(-2.7)
A 		9
C 2
(-2.3)
A 		10
(3)
A 		1.6
(-2.5)
A 		3
(-1.6)
A 		0.9
(-3)
A 		6.4
(0.6)
A 		9
avr 3.8
(0.2) 		5.2
(2.8) 		2.1
(-3) 		5.3
(3) 		4.1
(0.8) 		4.3
(1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18158
Sequence Type Exemplar sequence
Representative Public ID T14G12.5 NCBI
Target Description T14G12.5 /REP_DB=WormBase Gene ID /WP=CE04966 /TR=Q22511 /GB=AAA82437.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase and Epstein-Barr virus large tegument protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076245 NCBI Caenorhabditis elegans T14G12.5 (T14G12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000013401 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3744384:3755520:-1 9/11 None
T14G12.5 ENSEMBL cdna:known chromosome:CEL140:X:3746947:3753472:-1 gene:T14G12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title reverse transcriptase and Epstein-Barr virus large tegument protein
Ensembl T14G12.5
Entrez Gene 188510 Entrez gene
SwissProt Q22511 EMBL-EBI
WormBase CE04966 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508646 T14G12.5 [Caenorhabditis elegans] gb|AAA82437.1| Hypothetical protein T14G12.5 [Caenorhabditis elegans] 0.0
blast CAA92477 Hypothetical protein T05A1.4 [Caenorhabditis elegans] ref|NP_501697.1| T05A1.4 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.5E-23
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-96
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.2E-4
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.5E-23
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.1E-96
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.2E-4
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:194010_AT
gatttccaacttcccggagttatgcttgacatacctttcgtgcaccccacgggtaacgga
aggggagctgaagaacgtgcccgagcacatctcgctcaactcgagactgctcttaacaga
ctctggcaaatctggaccctaggttacctctttcacctacggaaagcgaaacatcgcaat
aagaagtgcacttcgataaaaccagctgtgggacaggttgtcctcatcgacacaaaccac
gtaaataggcacaaatggccccttggagtcattctccaagtacacgagtccaaacgcgat
cacgaagttcgaaccgctacagtcaaagctcacggcaagcgctgcctacgctccgtttgc
cagctcatccctctcgaagtacaagcttcagaggatttcacctccgccgatcccccatcg
gaaggagatcttgtggaactcgaagagcacgattgcgacgatccaacgtccgatatcccg
actcaagcatacttcgaacactcccgctcgaccgctcgaacattgctccgtgtctctccg
cgcgtatctgaaatacgctgtttgtcactcggtagggtgactgactcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCCAACTTCCCGGAGTTATGC 237 425 5506 Antisense
ATGCTTGACATACCTTTCGTGCACC 249 43 5527 Antisense
GAGACTGCTCTTAACAGACTCTGGC 45 395 5608 Antisense
ACTCTGGCAAATCTGGACCCTAGGT 298 61 5625 Antisense
ACAAATGGCCCCTTGGAGTCATTCT 89 107 5756 Antisense
ACACGAGTCCAAACGCGATCACGAA 678 109 5787 Antisense
GAACCGCTACAGTCAAAGCTCACGG 81 347 5816 Antisense
AGCTTCAGAGGATTTCACCTCCGCC 203 79 5889 Antisense
GATATCCCGACTCAAGCATACTTCG 287 423 5977 Antisense
GAAATACGCTGTTTGTCACTCGGTA 388 363 6055 Antisense
CACTCGGTAGGGTGACTGACTCCCC 645 95 6071 Antisense
Sequence Source Affymetrix Proprietary Database