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[194009_at]

Description T05A10.1 /REP_DB=WormBase Gene ID /WP=CE03633 /TR=Q22190 /GB=CAA92133.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=11-S plant seed storage proteins, Zinc finger, C2H2 type (7 domains)
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 904.4
(3)
P 		281.6
(-3)
P 		279.3
(-3)
P 		605.8
(0.1)
P 		625
B 642.7
(3)
P 		345
(-1.2)
P 		216
(-3)
P 		564
(1.9)
P 		427
C 843.2
(3)
P 		470.9
(-1.1)
P 		299.5
(-3)
P 		538.2
(-0.4)
P 		544
avr 796.8
(3) 		365.8
(-1.9) 		264.9
(-3) 		569.3
(0.4) 		532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 964
1 2 3 4 5 6 range
A 993
(3)
P 		715.3
(0.7)
P 		410.4
(-1.9)
P 		279.5
(-3)
P 		345.4
(-2.4)
P 		423.9
(-1.8)
P 		714
B 978.9
(3)
P 		606.5
(-0.1)
P 		452.7
(-1.3)
P 		386.4
(-1.9)
P 		248
(-3)
P 		335.1
(-2.3)
P 		731
C 1202.5
(3)
P 		736.8
(0.1)
P 		396.7
(-2)
P 		272.3
(-2.8)
P 		323.5
(-2.5)
P 		238.2
(-3)
P 		964
avr 1058.1
(3) 		686.2
(0) 		419.9
(-2.1) 		312.7
(-2.9) 		305.6
(-3) 		332.4
(-2.8) 		753
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 329.3
(3)
P 		61.1
(-3)
P 		73
(-2.7)
P 		88.7
(-2.4)
P 		268
B 205
(3)
P 		85.2
(-1.6)
P 		50.1
(-3)
P 		120.2
(-0.3)
P 		155
C 279.1
(3)
P 		135.4
(-1.6)
P 		104.4
(-2.6)
P 		90.7
(-3)
P 		188
avr 271.1
(3) 		93.9
(-2.4) 		75.8
(-3) 		99.9
(-2.3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 183.1
(0.7)
P 		254.4
(3)
P 		89.4
(-2.4)
P 		70.9
(-3)
P 		104.2
(-1.9)
P 		103.2
(-1.9)
P 		184
B 340.6
(3)
P 		201.9
(-0.5)
P 		109.9
(-2.8)
P 		102.3
(-3)
P 		100.8
(-3)
P 		125
(-2.4)
P 		240
C 445.7
(3)
P 		224.8
(-0.4)
P 		101
(-2.3)
P 		54.8
(-3)
P 		104.7
(-2.2)
P 		79.7
(-2.6)
P 		391
avr 323.1
(3) 		227
(0.7) 		100.1
(-2.4) 		76
(-3) 		103.2
(-2.3) 		102.6
(-2.4) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15973
Sequence Type Exemplar sequence
Representative Public ID T05A10.1 NCBI
Target Description T05A10.1 /REP_DB=WormBase Gene ID /WP=CE03633 /TR=Q22190 /GB=CAA92133.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=11-S plant seed storage proteins, Zinc finger, C2H2 type (7 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029706(11), NM_001029712(11), NM_001029710(11), NM_001029708(11), NM_001029707(11), NM_001029713(11), NM_001029709(11), NM_171771(11), NM_001029711(11), AY390539(11), AY390546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029706 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029712 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029710 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029708 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029707 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029713 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029709 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_171771 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
NM_001029711 NCBI Caenorhabditis elegans SMAll family member (sma-9) (sma-9) mRNA, complete cds. 11/11 None
AY390539 NCBI Caenorhabditis elegans isolate yk1136g02 SMA-9 class Ia (sma-9) mRNA, partial cds, alternatively spliced. 11/11 A 
AY390546 NCBI Caenorhabditis elegans isolate yk127d10 SMA-9 class IIb (sma-9) mRNA, partial cds, alternatively spliced. 11/11 A 
SNAP00000000835 ENSEMBL cdna:SNAP chromosome:CEL140:X:10773014:10782309:1 11/11 None
GENEFINDER00000000845 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10773014:10782309:1 11/11 None
T05A10.1j ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782854:1 gene:T05A10.1 11/11 A 
T05A10.1a ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782309:1 gene:T05A10.1 11/11 None
T05A10.1e ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782891:1 gene:T05A10.1 11/11 A 
T05A10.1f ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782309:1 gene:T05A10.1 11/11 None
T05A10.1g.1 ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782895:1 gene:T05A10.1 11/11 A 
T05A10.1d ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782885:1 gene:T05A10.1 11/11 A 
T05A10.1i ENSEMBL cdna:known chromosome:CEL140:X:10773014:10782897:1 gene:T05A10.1 11/11 A 
T05A10.1c ENSEMBL cdna:known chromosome:CEL140:X:10775208:10782309:1 gene:T05A10.1 11/11 None
T05A10.1h.3 ENSEMBL cdna:known chromosome:CEL140:X:10777824:10782893:1 gene:T05A10.1 11/11 A 
T05A10.1h.2 ENSEMBL cdna:known chromosome:CEL140:X:10778664:10782893:1 gene:T05A10.1 11/11 A 
T05A10.1h.1 ENSEMBL cdna:known chromosome:CEL140:X:10778911:10782893:1 gene:T05A10.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
T05A10.1g.2 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181271 10 9 NM_001029706 194009_at (11)
NM_001029707 174615_at (11), 194009_at (11)
NM_001029708 174615_at (11), 194009_at (11)
NM_001029709 194009_at (11)
NM_001029710 174615_at (11), 194009_at (11)
NM_001029711 174615_at (11), 194009_at (11)
NM_001029712 174615_at (11), 194009_at (11)
NM_001029713 174615_at (11), 194009_at (11)
NM_171771 194009_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10773013-10782309(+) 93.35 100.0
Public Domain and Genome References
Ensembl T05A10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAF31491 Hypothetical protein T05A10.1d [Caenorhabditis elegans] ref|NP_001024878.1| SMAll family member (sma-9) [Caenorhabditis elegans] 0.0
blast CAF31487 Hypothetical protein T05A10.1c [Caenorhabditis elegans] ref|NP_001024877.1| SMAll family member (sma-9) [Caenorhabditis elegans] 0.0
blast CAF31492 Hypothetical protein T05A10.1e [Caenorhabditis elegans] ref|NP_001024879.1| SMAll family member (sma-9) [Caenorhabditis elegans] 0.0
blast CAF31489 Hypothetical protein T05A10.1i [Caenorhabditis elegans] ref|NP_001024883.1| SMAll family member (sma-9) [Caenorhabditis elegans] 0.0
blast CAF31490 Hypothetical protein T05A10.1g [Caenorhabditis elegans] ref|NP_001024881.1| SMAll family member (sma-9) [Caenorhabditis elegans] 0.0
blast CAF31493 Hypothetical protein T05A10.1f [Caenorhabditis elegans] ref|NP_001024880.1| SMAll family member (sma-9) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.monodomain cytochrome c All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c 4.0
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Sequence
Target Sequence 
>C. ELEGANS:194009_AT
gtcttctttaagcggttctagccctactcatacaaaaaaattgatggtctggaatccacc
actcgctgagccatctttctactcaccaaaagcagctttgcatccattgtcaactgataa
ggcacacgcatcggaatccttgtcggaccgtctacacaacaagcgaccaagaccaatccc
cgacaacactaagtgccaaatttgtgcggatgaattttcaactccgattgaacttcaggt
tcacttgcacgttgaccatgttcgaatgatggatggtgccgagtacaagtgtccacgaaa
gttctgcggtctaaactacgagtccctcgacagcctgagagctcacgtgacagcacacta
tgaaactgacaggcaaaagctgcttgaggagaaggtgttgctcgcagaagcagattttcc
aatcgacaattccaaaattgaaaaattgaactcaccaaaaaaggagtccatgaataagtt
cacaactcctttcaaggctatttctgatcatcatgaactatacgcccagacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTCTTTAAGCGGTTCTAGCCCT 155 445 6183 Antisense
TTGATGGTCTGGAATCCACCACTCG 514 705 6223 Antisense
GCAGCTTTGCATCCATTGTCAACTG 680 313 6274 Antisense
AAGGCACACGCATCGGAATCCTTGT 424 161 6301 Antisense
GAACTTCAGGTTCACTTGCACGTTG 356 349 6412 Antisense
CTTGCACGTTGACCATGTTCGAATG 680 217 6426 Antisense
AAGTGTCCACGAAAGTTCTGCGGTC 184 157 6469 Antisense
TTCTGCGGTCTAAACTACGAGTCCC 236 665 6484 Antisense
GAGAGCTCACGTGACAGCACACTAT 383 395 6519 Antisense
TAAGTTCACAACTCCTTTCAAGGCT 33 635 6657 Antisense
CATCATGAACTATACGCCCAGACGC 565 213 6691 Antisense
Sequence Source Affymetrix Proprietary Database