[Home] | [Total List]

[194006_at]

Description Y37D8A.23 /REP_DB=WormBase Gene ID /WP=CE20226 /GEN=unc-25 /TR=Q9XTP4 /GB=CAA21537.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Pyridoxal-dependent decarboxylase conserved domain
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 34      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 32      6grp_total > 11      4grp_total > 52      6grp_highest_sub > 02      6grp_cgc > 44      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1077
1 2 3 4 range
A 1493.9
(1.1)
P 		1830.9
(3)
P 		1161.7
(-0.7)
P 		754.3
(-3)
P 		1077
B 1579.2
(2.3)
P 		1674.6
(3)
P 		1324.7
(0.6)
P 		800.5
(-3)
P 		874
C 1379
(2.2)
P 		1473.8
(3)
P 		1294.3
(1.4)
P 		784.1
(-3)
P 		690
avr 1484
(1.8) 		1659.8
(3) 		1260.2
(0.3) 		779.6
(-3) 		880

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1052
1 2 3 4 5 6 range
A 1298.7
(0.5)
P 		1729.1
(3)
P 		1161.4
(-0.2)
P 		964.4
(-1.4)
P 		676.8
(-3)
P 		874
(-1.9)
P 		1052
B 1156.9
(-0.4)
P 		1694.4
(3)
P 		1424.9
(1.3)
P 		865.6
(-2.3)
P 		757.2
(-3)
P 		777.2
(-2.9)
P 		937
C 1127.4
(0.2)
P 		1522.3
(3)
P 		1449.1
(2.5)
P 		917.4
(-1.3)
P 		677.8
(-3)
P 		963.7
(-1)
P 		845
avr 1194.3
(0.1) 		1648.6
(3) 		1345.1
(1.1) 		915.8
(-1.7) 		703.9
(-3) 		871.6
(-1.9) 		945
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 543.9
(3)
P 		397.4
(1)
P 		303.7
(-0.3)
P 		110.4
(-3)
P 		434
B 503.6
(3)
P 		413.6
(1.4)
P 		307
(-0.5)
P 		170.6
(-3)
P 		333
C 456.5
(3)
P 		423.7
(2.4)
P 		451.1
(2.9)
P 		132.2
(-3)
P 		324
avr 501.3
(3) 		411.6
(1.5) 		353.9
(0.6) 		137.7
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 239.4
(-2.5)
P 		615
(3)
P 		252.9
(-2.3)
P 		244.6
(-2.4)
P 		204.2
(-3)
P 		212.8
(-2.9)
P 		411
B 402.5
(0.1)
P 		564
(3)
P 		346
(-0.9)
P 		229.3
(-3)
P 		307.7
(-1.6)
P 		289.8
(-1.9)
P 		335
C 417.9
(2)
P 		464.5
(3)
P 		368.8
(0.9)
P 		184.5
(-3)
P 		219.3
(-2.3)
P 		322.6
(-0)
P 		280
avr 353.3
(-0.6) 		547.8
(3) 		322.6
(-1.1) 		219.5
(-3) 		243.7
(-2.6) 		275.1
(-2) 		328
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7815
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.23 NCBI
Target Description Y37D8A.23 /REP_DB=WormBase Gene ID /WP=CE20226 /GEN=unc-25 /TR=Q9XTP4 /GB=CAA21537.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Pyridoxal-dependent decarboxylase conserved domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067288(11), NM_001027661(11), NM_001027660(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067288 NCBI Caenorhabditis elegans UNCoordinated family member (unc-25) (unc-25) mRNA, complete cds. 11/11 None
NM_001027661 NCBI Caenorhabditis elegans UNCoordinated family member (unc-25) (unc-25) mRNA, complete cds. 11/11 None
NM_001027660 NCBI Caenorhabditis elegans UNCoordinated family member (unc-25) (unc-25) mRNA, complete cds. 10/11 None
SNAP00000028788 ENSEMBL cdna:SNAP chromosome:CEL140:III:12942177:12949230:1 11/11 None
GENEFINDER00000028789 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12942177:12949230:1 11/11 None
Y37D8A.23a ENSEMBL cdna:known chromosome:CEL140:III:12942163:12949415:1 gene:Y37D8A.23 11/11 None
Y37D8A.23c ENSEMBL cdna:known chromosome:CEL140:III:12942169:12949230:1 gene:Y37D8A.23 11/11 None
Y37D8A.23b ENSEMBL cdna:known chromosome:CEL140:III:12942177:12949347:1 gene:Y37D8A.23 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12942172-12949226(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y37D8A.23
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21537 Hypothetical protein Y37D8A.23a [Caenorhabditis elegans] ref|NP_499689.1| UNCoordinated family member (unc-25) [Caenorhabditis elegans] gb|AAD19958.1| glutamic acid decarboxylase [Caenorhabditis elegans] 0.0
blast CAE69543 Hypothetical protein CBG15755 [Caenorhabditis briggsae] 0.0
blast CAD45606 Hypothetical protein Y37D8A.23c [Caenorhabditis elegans] ref|NP_001022832.1| UNCoordinated family member (unc-25) [Caenorhabditis elegans] 0.0
blast CAD45605 Hypothetical protein Y37D8A.23b [Caenorhabditis elegans] ref|NP_001022831.1| UNCoordinated family member (unc-25) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:194006_AT
agctcatgggagcacttctccagtgctcggcatgcttgttccgtcaggatggactactgt
tccagtgtaatcaaatgtcggctgattatctattccaacaagataaaccgtacgatgtga
gctttgatactggagataaagccattcaatgtggacggcacaatgatgttttcaagcttt
ggttgatgtggaagagcaagggaatggagggatatcgtcagcaaattaataagttgatgg
atttggccaactattttaccaggagaattaaggaaactgaaggatttgagttgattattg
agaatcccgaattcctgaacatttgtttctggtacgtgccttcaaagattcgaaacttgg
agcctgctgaaatgcgtgctcgtttggagaaaattgccccaaaaattaaagccggcatga
tgcaaagaggtaccacaatggttggatatcaaccggataagcagcgaccaaatttcttcc
gaatgattatttcgaatcaggcaatcactcgcgaggacctcgactttctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCATGGGAGCACTTCTCCAGTG 87 81 971 Antisense
GCATGCTTGTTCCGTCAGGATGGAC 59 311 1000 Antisense
GATGGACTACTGTTCCAGTGTAATC 429 407 1018 Antisense
ATGTCGGCTGATTATCTATTCCAAC 276 49 1045 Antisense
GGATTTGGCCAACTATTTTACCAGG 35 511 1209 Antisense
AATCCCGAATTCCTGAACATTTGTT 403 167 1273 Antisense
ACATTTGTTTCTGGTACGTGCCTTC 340 105 1289 Antisense
GATTCGAAACTTGGAGCCTGCTGAA 277 433 1317 Antisense
AAGCAGCGACCAAATTTCTTCCGAA 616 151 1429 Antisense
GAATCAGGCAATCACTCGCGAGGAC 651 327 1464 Antisense
CTCGCGAGGACCTCGACTTTCTCAT 423 233 1478 Antisense
Sequence Source Affymetrix Proprietary Database