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[194003_s_at] macrophage migration inhibitory factor like protein

Description C52E4.2 /REP_DB=WormBase Gene ID /WP=CE08944 /GEN=mif-1 /TR=SW:Q18785 /GB=CAB01412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=macrophage migration inhibitory factor like protein
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 41      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 24      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2392
1 2 3 4 range
A 2803.7
(1.3)
P 		3386.3
(3)
P 		2940.7
(1.7)
P 		1359.7
(-3)
P 		2027
B 3191.8
(3)
P 		3051.3
(2.6)
P 		3012
(2.5)
P 		1068.2
(-3)
P 		2124
C 2786.1
(2.1)
P 		3096.1
(3)
P 		2706.3
(1.9)
P 		994.6
(-3)
P 		2102
avr 2927.2
(2.3) 		3177.9
(3) 		2886.3
(2.1) 		1140.8
(-3) 		2037

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2552
1 2 3 4 5 6 range
A 3274.2
(0.9)
P 		3201.9
(0.8)
P 		4130.7
(3)
P 		3492.2
(1.5)
P 		2177.9
(-1.7)
P 		1643.3
(-3)
P 		2487
B 2823
(-0.6)
P 		3362.5
(0.8)
P 		4195.1
(3)
P 		3135.4
(0.2)
P 		2139.4
(-2.4)
P 		1898.4
(-3)
P 		2297
C 2441.4
(-1.1)
P 		3594.5
(2.2)
P 		3436.7
(1.8)
P 		3857.7
(3)
P 		1948.1
(-2.5)
P 		1780.1
(-3)
P 		2078
avr 2846.2
(-0) 		3386.3
(1.5) 		3920.8
(3) 		3495.1
(1.8) 		2088.5
(-2.1) 		1773.9
(-3) 		2147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 853
1 2 3 4 range
A 1020.8
(3)
P 		735.1
(0.9)
P 		768.7
(1.2)
P 		199
(-3)
P 		822
B 1017.8
(3)
P 		753.6
(1)
P 		697.9
(0.6)
P 		227.6
(-3)
P 		790
C 922.3
(2.8)
P 		890.1
(2.6)
P 		943.2
(3)
P 		167.7
(-3)
P 		776
avr 987
(3) 		792.9
(1.5) 		803.3
(1.6) 		198.1
(-3) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 739
1 2 3 4 5 6 range
A 603.6
(-1.3)
P 		1138.8
(3)
P 		899.6
(1.1)
P 		885.7
(0.9)
P 		657.2
(-0.9)
P 		400.1
(-3)
P 		739
B 982.3
(1)
P 		1119.2
(3)
P 		1018.7
(1.5)
P 		830.5
(-1.2)
P 		869.2
(-0.6)
P 		707.9
(-3)
P 		411
C 904.9
(0.7)
P 		1096.8
(3)
P 		874.7
(0.3)
P 		775.8
(-0.8)
P 		630.4
(-2.6)
P 		595.9
(-3)
P 		501
avr 830.3
(-0.1) 		1118.3
(3) 		931
(1) 		830.7
(-0.1) 		718.9
(-1.4) 		568
(-3) 		550
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 194003_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12963
Sequence Type Exemplar sequence
Representative Public ID C52E4.2 NCBI
Target Description C52E4.2 /REP_DB=WormBase Gene ID /WP=CE08944 /GEN=mif-1 /TR=SW:Q18785 /GB=CAB01412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=macrophage migration inhibitory factor like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073602 NCBI Caenorhabditis elegans MIF (macrophage migration inhibitory factor) related family member (mif-2) (mif-2) mRNA, complete cds. 11/11 None
SNAP00000019784 ENSEMBL cdna:SNAP chromosome:CEL140:V:11979465:11980834:-1 11/11 None
GENEFINDER00000019793 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11979465:11980834:-1 11/11 None
C52E4.2.1 ENSEMBL cdna:known chromosome:CEL140:V:11979365:11980843:-1 gene:C52E4.2 11/11 None
C52E4.2.2 ENSEMBL cdna:known chromosome:CEL140:V:11979387:11980845:-1 gene:C52E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11979464-11980834(-) 100.0 100.0
Public Domain and Genome References
Gene Title macrophage migration inhibitory factor like protein
Gene Symbol mif-2
Ensembl C52E4.2
Entrez Gene 179638 Entrez gene
SwissProt Q18785 EMBL-EBI
WormBase CE08944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01412 Hypothetical protein C52E4.2 [Caenorhabditis elegans] ref|NP_506003.1| MIF (macrophage migration inhibitory factor) related family member (mif-2) [Caenorhabditis elegans] sp|Q18785|MIF2_CAEEL MIF-like protein mif-2 5.0E-62
blast CAE75360 Hypothetical protein CBG23344 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001398 EMBL-EBI Macrophage migration inhibitory factor 3.1E-79
Sequence
Target Sequence 
>C. ELEGANS:194003_S_AT
ggtcagagttgcgacgaatctaccaaatgagaaggttcctgttgattttgagattcgtct
caccgatcttcttgctcgatcaatgggaaaaccaagagagagaattgctgtcgagatagc
cgccggtgctcgtctagttcatggggccactcatgatcctgtgaccgtaatttcgatcaa
atcaatcggagcagtgtctgctgaagacaatattcgcaatacggcagccatcactgagtt
ttgtggaaaggaattgggtcttccaaaagataaggttgttatcacattccacgacttacc
accagctacggtagggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCAGAGTTGCGACGAATCTACCA 96 503 21 Antisense
GAGAAGGTTCCTGTTGATTTTGAGA 684 363 49 Antisense
TTGAGATTCGTCTCACCGATCTTCT 118 703 68 Antisense
CACCGATCTTCTTGCTCGATCAATG 124 201 81 Antisense
AGAATTGCTGTCGAGATAGCCGCCG 681 75 121 Antisense
AGTTCATGGGGCCACTCATGATCCT 648 63 156 Antisense
CATGATCCTGTGACCGTAATTTCGA 674 209 172 Antisense
ATATTCGCAATACGGCAGCCATCAC 376 19 230 Antisense
GGCAGCCATCACTGAGTTTTGTGGA 324 533 243 Antisense
TGTTATCACATTCCACGACTTACCA 510 561 297 Antisense
GACTTACCACCAGCTACGGTAGGGT 311 369 313 Antisense
Sequence Source Affymetrix Proprietary Database