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[194002_at] Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Description F32F2.1 /REP_DB=WormBase Gene ID /WP=CE18658 /TR=Q9XXM9 /GB=CAA18349.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Guanine nucleotide exchange factor for Rho-Rac-Cdc42-like GTPases
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 851
1 2 3 4 range
A 1108.3
(3)
P 		844.7
(0.5)
P 		875.7
(0.8)
P 		480.6
(-3)
P 		628
B 957.3
(1.4)
P 		1176.3
(3)
P 		870.9
(0.7)
P 		367.2
(-3)
P 		809
C 1049.4
(3)
P 		1032.4
(2.9)
P 		948.4
(2.2)
P 		325.7
(-3)
P 		724
avr 1038.3
(3) 		1017.8
(2.8) 		898.3
(1.7) 		391.2
(-3) 		647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 720
1 2 3 4 5 6 range
A 765.2
(-0.1)
P 		1128.3
(3)
P 		670.4
(-0.9)
P 		595
(-1.5)
P 		609.1
(-1.4)
P 		418.9
(-3)
P 		709
B 770.9
(2.4)
P 		810.7
(3)
P 		762.5
(2.3)
P 		674.5
(1)
P 		507.6
(-1.5)
P 		408
(-3)
P 		403
C 667.1
(-0.1)
P 		941.5
(3)
P 		761.5
(1)
P 		725.9
(0.5)
P 		464.1
(-2.4)
P 		414
(-3)
P 		528
avr 734.4
(0.5) 		960.2
(3) 		731.5
(0.5) 		665.1
(-0.2) 		526.9
(-1.8) 		413.6
(-3) 		547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 403.5
(3)
P 		183.4
(-1)
P 		228.9
(-0.1)
P 		70.3
(-3)
P 		333
B 305.3
(3)
P 		290.5
(2.6)
P 		201.8
(0.3)
P 		78.2
(-3)
P 		227
C 347.4
(3)
P 		296.8
(2)
P 		330.5
(2.7)
P 		54.9
(-3)
P 		293
avr 352.1
(3) 		256.9
(1) 		253.7
(0.9) 		67.8
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 141.1
(-2.2)
P 		401.3
(3)
P 		146
(-2.1)
P 		150.9
(-2)
P 		183.8
(-1.4)
P 		102
(-3)
P 		299
B 268.2
(2.9)
P 		269.8
(3)
P 		185.2
(-1.3)
P 		178.7
(-1.6)
P 		206.2
(-0.2)
P 		152.1
(-3)
P 		118
C 247.3
(1.4)
P 		287.3
(3)
P 		193.8
(-0.8)
P 		146
(-2.7)
P 		150.2
(-2.5)
P 		138.6
(-3)
P 		149
avr 218.9
(-0.2) 		319.5
(3) 		175
(-1.6) 		158.5
(-2.1) 		180.1
(-1.4) 		130.9
(-3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13190
Sequence Type Exemplar sequence
Representative Public ID F32F2.1 NCBI
Target Description F32F2.1 /REP_DB=WormBase Gene ID /WP=CE18658 /TR=Q9XXM9 /GB=CAA18349.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Guanine nucleotide exchange factor for Rho-Rac-Cdc42-like GTPases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073892 NCBI Caenorhabditis elegans F32F2.1 (F32F2.1) mRNA, complete cds. 11/11 None
SNAP00000028633 ENSEMBL cdna:SNAP chromosome:CEL140:V:13276181:13280297:-1 11/11 None
GENEFINDER00000028636 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13276181:13282520:-1 11/11 None
F32F2.1 ENSEMBL cdna:known chromosome:CEL140:V:13275767:13286577:-1 gene:F32F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13276180-13286544(-) 100.0 100.0
Public Domain and Genome References
Gene Title Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
Ensembl F32F2.1
Entrez Gene 179808 Entrez gene
SwissProt Q9XXM9 EMBL-EBI
WormBase CE18658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18349 Hypothetical protein F32F2.1 [Caenorhabditis elegans] ref|NP_506293.1| F32F2.1 [Caenorhabditis elegans] 0.0
blast CAE64641 Hypothetical protein CBG09405 [Caenorhabditis briggsae] 0.0
blast XP_604128 PREDICTED: similar to Pleckstrin homology domain containing family G member 1 [Bos taurus] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.0E-23
Pfam IPR000219 EMBL-EBI DH domain 1.0E-23
Pfam IPR000219 EMBL-EBI DH domain 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:194002_AT
aatcaggagtcacgatccacatccagtcgtcgcatgggggaagaagaaattgatcggaca
tttgatcagttatacgaagagttagtgtcgtttggggattctacaaagccaacagttacg
tcgaaccgcagccaacgccttagatcggaggcaccgcagagtactgtaactaccataact
gtagctgcaacacctgcaactgcaactctgtcaatagccgaatgtgcaaatacacgttta
cgatcgaaatctttgactcgacttgatgaatatgaggctgaacctatttctttgaaacca
agcattgaaagacgatattcaaaagtagaccaactgaaaaagcgatcaagaaaatatcaa
gtgaatcaggaaccagaagctgctgatgtattgcgtcccagtgttggtagattctctcta
actgatcatgagattataattcacggagaggaaccgtacaagcgaagttccggacgacaa
cgtaccccattaaccgctcaacaaaccgctgagcttgacgattactttccatcatcgaat
tcaatgaattcagctccacagacatgttccagcagtgcaactcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAGGAGTCACGATCCACATCCA 615 169 2149 Antisense
CACATCCAGTCGTCGCATGGGGGAA 27 195 2166 Antisense
GCAGCCAACGCCTTAGATCGGAGGC 127 313 2276 Antisense
GGCACCGCAGAGTACTGTAACTACC 80 537 2298 Antisense
TGTAGCTGCAACACCTGCAACTGCA 418 559 2328 Antisense
GCAACTGCAACTCTGTCAATAGCCG 605 319 2344 Antisense
GAAGCTGCTGATGTATTGCGTCCCA 331 341 2524 Antisense
CCATTAACCGCTCAACAAACCGCTG 258 269 2635 Antisense
GCTGAGCTTGACGATTACTTTCCAT 386 295 2656 Antisense
GAATTCAGCTCCACAGACATGTTCC 320 325 2694 Antisense
GACATGTTCCAGCAGTGCAACTCCA 588 369 2709 Antisense
Sequence Source Affymetrix Proprietary Database