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[194000_at] CUB domain, Lectin C-type domain short and long forms (2 domains)

Description F56H6.8 /REP_DB=WormBase Gene ID /WP=CE16136 /TR=O45586 /GB=CAB04497.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=CUB domain, Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 43      4grp_total > 04      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.6
(-3)
A 		10.7
(2.9)
A 		10.4
(2.6)
A 		10.8
(3)
A 		6
B 11.1
(-2.7)
A 		10.4
(-3)
A 		10.9
(-2.8)
A 		25.6
(3)
A 		15
C 24
(-0.4)
A 		9.9
(-2.7)
A 		8
(-3)
A 		44.9
(3)
A 		37
avr 13.2
(-1.8) 		10.3
(-2.8) 		9.8
(-3) 		27.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.9
(-1)
A 		9.3
(0.4)
A 		13.6
(3)
A 		5
(-2.2)
A 		3.6
(-3)
A 		7.2
(-0.8)
A 		10
B 7.9
(-1.2)
A 		4.7
(-2.4)
A 		19.9
(3)
A 		3.4
(-2.8)
A 		3.6
(-2.8)
A 		2.9
(-3)
A 		17
C 7.2
(3)
A 		6.8
(2.4)
A 		4.5
(-1.4)
A 		3.5
(-3)
A 		4
(-2.2)
A 		5.4
(0.1)
A 		4
avr 7.3
(-0.6) 		6.9
(-0.9) 		12.7
(3) 		4
(-2.8) 		3.7
(-3) 		5.2
(-2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-2.5)
A 		2.3
(0.8)
A 		2.7
(3)
A 		1.6
(-3)
A 		1
B 3.5
(-1)
A 		2.6
(-2.8)
A 		2.5
(-3)
A 		5.5
(3)
A 		3
C 8
(3)
A 		2.8
(-3)
A 		2.8
(-3)
A 		7.6
(2.5)
A 		5
avr 4.4
(1.7) 		2.6
(-3) 		2.7
(-2.7) 		4.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.3
(-2.5)
A 		3.3
(3)
A 		3
(2.2)
A 		1.3
(-2.5)
A 		1.1
(-3)
A 		1.8
(-1.1)
A 		2
B 2.7
(-0.2)
A 		1.6
(-1.9)
A 		4.8
(3)
A 		0.9
(-3)
A 		1.4
(-2.2)
A 		1.1
(-2.7)
A 		4
C 2.7
(3)
A 		2.1
(1.2)
A 		1.1
(-1.8)
A 		0.7
(-3)
A 		1.3
(-1.2)
A 		1.8
(0.3)
A 		2
avr 2.2
(0.6) 		2.3
(0.9) 		3
(3) 		1
(-3) 		1.3
(-2.1) 		1.6
(-1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 194000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1991
Sequence Type Exemplar sequence
Representative Public ID F56H6.8 NCBI
Target Description F56H6.8 /REP_DB=WormBase Gene ID /WP=CE16136 /TR=O45586 /GB=CAB04497.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=CUB domain, Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060708 NCBI Caenorhabditis elegans C-type LECtin family member (clec-18) (clec-18) mRNA, complete cds. 11/11 None
SNAP00000044658 ENSEMBL cdna:SNAP chromosome:CEL140:I:12309546:12311279:-1 11/11 None
GENEFINDER00000044666 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12309546:12311279:-1 11/11 None
F56H6.8 ENSEMBL cdna:known chromosome:CEL140:I:12309546:12311279:-1 gene:F56H6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12309476-12311210(-) 100.0 100.0
Public Domain and Genome References
Gene Title CUB domain, Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-18
Ensembl F56H6.8
Entrez Gene 186419 Entrez gene
SwissProt O45586 EMBL-EBI
WormBase CE16136 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04497 Hypothetical protein F56H6.8 [Caenorhabditis elegans] ref|NP_493109.1| C-type LECtin family member (clec-18) [Caenorhabditis elegans] 0.0
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-124
blast CAB04034 Hypothetical protein E03H4.10 [Caenorhabditis elegans] ref|NP_493152.1| C-type LECtin family member (clec-17) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.0E-9
Pfam IPR001304 EMBL-EBI C-type lectin 5.4E-12
Pfam IPR000859 EMBL-EBI CUB 8.2E-12
Sequence
Target Sequence 
>C. ELEGANS:194000_AT
aagtggaggagctcactcgactggttcgtggtacagcgcagattgtagtattactaagca
atacatttgcaaacgaagagctggtgtgcagtgctccatgacctcaacaacagctattcc
attccctgaaattccatcaaactgcaatgttggaattcaaatggctcctggtgtcatcaa
ctctcgcaatctttctggatcggtgaactgtacttatcagcttgctacactggggcctta
caagatagctttaaaattcacatttttcgacacaggaaatgattatgtcacaatttacga
tggtccgtcaaccgaaagtccaattttggggcgttacagcggtaacatgtatgaatttac
aaggacatcaagtggtagcaccatggttgtcacattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGGAGGAGCTCACTCGACTGGT 337 157 780 Antisense
TCGACTGGTTCGTGGTACAGCGCAG 663 597 796 Antisense
GAGCTGGTGTGCAGTGCTCCATGAC 364 387 857 Antisense
TGCTCCATGACCTCAACAACAGCTA 688 581 871 Antisense
ACAGCTATTCCATTCCCTGAAATTC 394 109 889 Antisense
TCAAATGGCTCCTGGTGTCATCAAC 419 629 936 Antisense
CAACTCTCGCAATCTTTCTGGATCG 428 187 957 Antisense
TGAACTGTACTTATCAGCTTGCTAC 557 573 983 Antisense
GCTTGCTACACTGGGGCCTTACAAG 123 307 999 Antisense
GATGGTCCGTCAACCGAAAGTCCAA 49 407 1078 Antisense
GGTAGCACCATGGTTGTCACATTCA 409 503 1153 Antisense
Sequence Source Affymetrix Proprietary Database