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[193999_at]

Description C06G1.4 /REP_DB=WormBase Gene ID /WP=CE25760 /TR=Q17740 /GB=AAK32947.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=D. melanogaster homeotic gene regulartor (Brahma protein) (weak)
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 62      4grp_high_8_8 > 27      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 29      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 427
1 2 3 4 range
A 679.8
(0.5)
P 		858
(3)
P 		431
(-3)
P 		825.4
(2.5)
P 		427
B 772.8
(3)
P 		460.4
(-3)
P 		487.1
(-2.5)
P 		674.6
(1.1)
P 		312
C 826.6
(3)
P 		653.3
(-0.9)
P 		570.3
(-2.7)
P 		557.6
(-3)
P 		269
avr 759.7
(3) 		657.2
(0.7) 		496.1
(-3) 		685.9
(1.3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 502.5
(0.1)
P 		714.9
(3)
P 		273.5
(-3)
P 		383.2
(-1.5)
P 		285.6
(-2.8)
P 		404.6
(-1.2)
P 		441
B 535.8
(3)
P 		454.3
(1.1)
P 		435.2
(0.6)
P 		341.9
(-1.6)
P 		284.2
(-3)
P 		309.7
(-2.4)
P 		252
C 954
(3)
P 		360.6
(-2)
P 		450.9
(-1.3)
P 		260.4
(-2.9)
P 		375.7
(-1.9)
P 		245.8
(-3)
P 		708
avr 664.1
(3) 		509.9
(0.3) 		386.5
(-1.8) 		328.5
(-2.8) 		315.2
(-3) 		320
(-2.9) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 247.5
(3)
P 		186.2
(0.3)
P 		112.7
(-3)
P 		120.8
(-2.6)
P 		135
B 246.4
(3)
P 		113.7
(-3)
P 		112.9
(-3)
P 		143.7
(-1.6)
P 		134
C 273.6
(3)
P 		187.8
(0.1)
P 		198.8
(0.5)
P 		94
(-3)
P 		180
avr 255.8
(3) 		162.6
(-1.1) 		141.5
(-2) 		119.5
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 92.6
(-2)
P 		254.2
(3)
P 		59.6
(-3)
P 		97.2
(-1.8)
P 		86.2
(-2.2)
P 		98.5
(-1.8)
P 		195
B 186.4
(3)
P 		151.2
(0.8)
P 		105.7
(-2.1)
P 		90.6
(-3)
P 		115.5
(-1.4)
P 		115.5
(-1.4)
P 		96
C 353.6
(3)
P 		110
(-1.9)
P 		114.8
(-1.8)
P 		52.4
(-3)
P 		121.6
(-1.6)
P 		82.3
(-2.4)
P 		301
avr 210.9
(3) 		171.8
(1.2) 		93.4
(-2.4) 		80.1
(-3) 		107.8
(-1.7) 		98.8
(-2.1) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17707
Sequence Type Exemplar sequence
Representative Public ID C06G1.4 NCBI
Target Description C06G1.4 /REP_DB=WormBase Gene ID /WP=CE25760 /TR=Q17740 /GB=AAK32947.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=D. melanogaster homeotic gene regulartor (Brahma protein) (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078286(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078286 NCBI Caenorhabditis elegans C06G1.4 (C06G1.4) mRNA, complete cds. 10/11 None
GENEFINDER00000018884 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16612669:16616160:1 10/11 None
SNAP00000018876 ENSEMBL cdna:SNAP chromosome:CEL140:X:16613406:16616160:1 10/11 None
C06G1.4.1 ENSEMBL cdna:known chromosome:CEL140:X:16613362:16617800:1 gene:C06G1.4 10/11 None
C06G1.4.2 ENSEMBL cdna:known chromosome:CEL140:X:16613364:16616774:1 gene:C06G1.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16613405-16617461(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ain-1
Ensembl C06G1.4
Entrez Gene 181719 Entrez gene
SwissProt Q17740 EMBL-EBI
WormBase CE03967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK32947 Hypothetical protein C06G1.4 [Caenorhabditis elegans] ref|NP_510687.2| C06G1.4 [Caenorhabditis elegans] pir||T30076 hypothetical protein C06G1.4 - Caenorhabditis elegans 0.0
blast CAE69956 Hypothetical protein CBG16346 [Caenorhabditis briggsae] 1.0E-143
blast CAE69956 Hypothetical protein CBG16346 [Caenorhabditis briggsae] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:193999_AT
gaatcagcacacttcaacattctccagtgacaacaccactggatcgtgggtgcagggagg
aacaattccactcaatgagcccggaaccaatcaacacgtggctgtggcggagatgctgaa
gaacgctgtcgacaagggatacctggaccagagcgtgacgatgatggccaacttaccgcc
aatggtgctgcagtatgtcaatatgctgctcgtcaaaattccagcgttggatagtgtgga
gaatgagctgaagcagataattgagagttctctgccagaagatgtgaaagaggttgatcc
acagaatcaacaaaagtacatgaatgatagtcaaaagcttgaacacaatcgtctcatcat
cgaagtgacgacagcaaagattgaagttcaagaatactcgaaaaaagtgaaccgtgcgct
gatggacgctggaattgtgcaaccgcaggagcaacgtgcgccagcctcaacgatggtgtt
ctcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGCACACTTCAACATTCTCC 316 327 1437 Antisense
CCACTCAATGAGCCCGGAACCAATC 361 273 1504 Antisense
CACGTGGCTGTGGCGGAGATGCTGA 473 199 1531 Antisense
GAGATGCTGAAGAACGCTGTCGACA 556 395 1546 Antisense
TACCTGGACCAGAGCGTGACGATGA 638 649 1576 Antisense
GTGACGATGATGGCCAACTTACCGC 208 479 1591 Antisense
AACTTACCGCCAATGGTGCTGCAGT 614 139 1606 Antisense
GCTTGAACACAATCGTCTCATCATC 16 307 1773 Antisense
AGTGAACCGTGCGCTGATGGACGCT 440 59 1842 Antisense
TGGACGCTGGAATTGTGCAACCGCA 129 549 1859 Antisense
CAGCCTCAACGATGGTGTTCTCATT 692 201 1898 Antisense
Sequence Source Affymetrix Proprietary Database