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[193997_at] CUB domain, Lectin C-type domain short and long forms (2 domains)

Description T27F6.2 /REP_DB=WormBase Gene ID /WP=CE16512 /TR=O45867 /GB=CAB04882.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=CUB domain, Lectin C-type domain short and long forms (2 domains)
Cluster 6grp_total > 71      4grp_total > 45      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 17.6
(3)
A 		3.7
(-3)
A 		4.7
(-2.6)
A 		7.3
(-1.4)
A 		14
B 54.1
(3)
A 		30.8
(0.3)
A 		2.8
(-3)
A 		4.7
(-2.8)
A 		51
C 34.1
(3)
A 		27.8
(1.8)
A 		3.8
(-3)
A 		4.4
(-2.9)
A 		30
avr 35.3
(3) 		20.8
(0.2) 		3.8
(-3) 		5.5
(-2.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1259
1 2 3 4 5 6 range
A 3.3
(-3)
A 		18.7
(-2.9)
A 		367.7
(-0.6)
P 		924.9
(3)
P 		496.2
(0.2)
P 		170
(-1.9)
A 		922
B 1.8
(-3)
A 		38.3
(-2.8)
A 		471.3
(-0.8)
P 		1260.7
(3)
P 		558
(-0.3)
P 		140.8
(-2.3)
P 		1259
C 4.2
(-3)
A 		21.2
(-2.9)
A 		429.8
(-0.4)
P 		995.2
(3)
P 		491.4
(-0.1)
P 		170.1
(-2)
P 		991
avr 3.1
(-3) 		26.1
(-2.9) 		422.9
(-0.6) 		1060.3
(3) 		515.2
(-0.1) 		160.3
(-2.1) 		1057
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.4
(3)
A 		0.8
(-3)
A 		1.2
(-2.6)
A 		1.1
(-2.7)
A 		6
B 17.2
(3)
A 		7.6
(-0.5)
A 		0.6
(-3)
A 		1
(-2.9)
A 		17
C 11.3
(3)
A 		8
(1.1)
A 		1.3
(-2.7)
A 		0.7
(-3)
A 		11
avr 11.6
(3) 		5.5
(-0.4) 		1
(-2.9) 		0.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.6
(-2.8)
A 		80.1
(-1)
P 		234.6
(3)
P 		149.7
(0.8)
P 		41.4
(-2)
A 		234
B 0.6
(-3)
A 		12.7
(-2.8)
A 		114.4
(-1)
P 		333.9
(3)
P 		226.7
(1.1)
P 		52.5
(-2.1)
P 		333
C 1.5
(-3)
A 		6.5
(-2.8)
A 		109.4
(0.3)
P 		200.1
(3)
P 		159
(1.8)
P 		56.9
(-1.3)
P 		199
avr 0.9
(-3) 		8.6
(-2.8) 		101.3
(-0.6) 		256.2
(3) 		178.5
(1.2) 		50.3
(-1.8) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1239
Sequence Type Exemplar sequence
Representative Public ID T27F6.2 NCBI
Target Description T27F6.2 /REP_DB=WormBase Gene ID /WP=CE16512 /TR=O45867 /GB=CAB04882.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=CUB domain, Lectin C-type domain short and long forms (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060765 NCBI Caenorhabditis elegans C-type LECtin family member (clec-12) (clec-12) mRNA, complete cds. 11/11 None
GENEFINDER00000032612 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12482763:12486709:-1 11/11 None
SNAP00000032597 ENSEMBL cdna:SNAP chromosome:CEL140:I:12484806:12488331:-1 11/11 None
T27F6.2 ENSEMBL cdna:known chromosome:CEL140:I:12484806:12486709:-1 gene:T27F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12484736-12486640(-) 100.0 100.0
Public Domain and Genome References
Gene Title CUB domain, Lectin C-type domain short and long forms (2 domains)
Gene Symbol clec-12
Ensembl T27F6.2
Entrez Gene 189004 Entrez gene
SwissProt O45867 EMBL-EBI
WormBase CE16512 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04882 Hypothetical protein T27F6.2 [Caenorhabditis elegans] ref|NP_493166.1| C-type LECtin family member (clec-12) [Caenorhabditis elegans] 0.0
blast CAB04882 Hypothetical protein T27F6.2 [Caenorhabditis elegans] ref|NP_493166.1| C-type LECtin family member (clec-12) [Caenorhabditis elegans] 1.0E-166
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-144
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 1.0E-138
blast CAB04034 Hypothetical protein E03H4.10 [Caenorhabditis elegans] ref|NP_493152.1| C-type LECtin family member (clec-17) [Caenorhabditis elegans] 1.0E-137
blast CAB04034 Hypothetical protein E03H4.10 [Caenorhabditis elegans] ref|NP_493152.1| C-type LECtin family member (clec-17) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.8E-7
Pfam IPR001304 EMBL-EBI C-type lectin 1.0E-10
Pfam IPR000859 EMBL-EBI CUB 9.9E-31
Pfam IPR000859 EMBL-EBI CUB 4.8E-21
Pfam IPR001304 EMBL-EBI C-type lectin 1.0E-10
Pfam IPR000859 EMBL-EBI CUB 9.9E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032612 3 418-440,445-467,480-502
Sequence
Target Sequence 
>C. ELEGANS:193997_AT
ccccacacgcatatttctatatcggagctatttggaaaaatgatggcagtctctactggt
tggataactcaccgtgggactacaataatatcgacccagttcaaactaatcgagtggatt
attgcttgacaatgtcgacgacaaactttggaagttctccagctggtttttggtttagca
ccaattgcaataaccccggatattatatttgcaagcgtcaagccggtgttcaatgctcag
ctgcaccaccagcaactgtcactccaagccctgcaaatccatcgaattgcaatgcaggcc
gactgatgtctgatggaatcataacttccccaaactttccacaaaattacttcaacaacg
caaactgtgcataccagatttctacattgggatctatgaggatcgctttgacgtttactt
ttttcaacacacaaccttacgacttagtgaccatctacgacggagaaacatcgagtagcc
cagtgttggggaaatatggtgggaaccaaagcagtcttacctttacgtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCACACGCATATTTCTATATCGG 301 261 650 Antisense
GTTGGATAACTCACCGTGGGACTAC 231 243 708 Antisense
GGAAGTTCTCCAGCTGGTTTTTGGT 244 531 799 Antisense
CACCAATTGCAATAACCCCGGATAT 232 147 828 Antisense
GTCAAGCCGGTGTTCAATGCTCAGC 301 463 866 Antisense
CAAGCCCTGCAAATCCATCGAATTG 446 185 914 Antisense
GCAATGCAGGCCGACTGATGTCTGA 532 321 938 Antisense
ATGAGGATCGCTTTGACGTTTACTT 444 43 1045 Antisense
TTTCAACACACAACCTTACGACTTA 420 671 1071 Antisense
ACGACTTAGTGACCATCTACGACGG 447 91 1088 Antisense
AAAGCAGTCTTACCTTTACGTCGAG 177 123 1157 Antisense
Sequence Source Affymetrix Proprietary Database