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[193995_s_at]

Description M176.9 /REP_DB=WormBase Gene ID /WP=CE18899 /TR=Q9XTH2 /GB=CAA19543.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Src homology domain 2, tyrosine-protein kinase (FES-FPS subfamily)
Cluster 6grp_total > 86      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 26.7
(0.9)
A 		6
(-2.4)
A 		1.8
(-3)
A 		40.6
(3)
A 		39
B 4.5
(-3)
A 		9.4
(-1.5)
A 		24.7
(3)
A 		21.2
(2)
A 		20
C 5
(-3)
A 		25.6
(2.6)
A 		23.8
(2.1)
A 		27.2
(3)
A 		22
avr 12.1
(-3) 		13.7
(-2.5) 		16.8
(-1.4) 		29.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 40.5
(0.7)
A 		23.3
(-1)
A 		3
(-3)
A 		21.3
(-1.2)
A 		29.9
(-0.4)
A 		64.4
(3)
A 		61
B 21.8
(-1.4)
A 		31.7
(-0.3)
A 		8.1
(-3)
A 		28.8
(-0.7)
A 		55.4
(2.4)
P 		61
(3)
P 		53
C 5.4
(-3)
A 		8.4
(-2.7)
A 		51.6
(1.5)
A 		57.4
(2.1)
A 		43.6
(0.7)
M 		67.1
(3)
P 		62
avr 22.6
(-2.8) 		21.1
(-3) 		20.9
(-3) 		35.8
(-0.9) 		43
(0.1) 		64.2
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.7
(3)
A 		1.3
(-2.5)
A 		0.5
(-3)
A 		5.9
(0.5)
A 		9
B 1.4
(-3)
A 		2.3
(-1.7)
A 		5.7
(3)
A 		4.5
(1.3)
A 		4
C 1.6
(-3)
A 		7.4
(2.2)
A 		8.3
(3)
A 		4.6
(-0.3)
A 		7
avr 4.2
(-0.7) 		3.7
(-3) 		4.8
(2.1) 		5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.5
(-0.3)
A 		8.3
(0)
A 		0.7
(-3)
A 		5.4
(-1.1)
A 		9
(0.3)
A 		15.7
(3)
A 		15
B 7.6
(-1.4)
A 		10.6
(-0.5)
A 		2
(-3)
A 		7.6
(-1.4)
A 		22.5
(2.9)
P 		22.8
(3)
P 		21
C 2
(-3)
A 		2.6
(-2.8)
A 		13.1
(0.2)
A 		11.5
(-0.2)
A 		14.1
(0.5)
M 		22.5
(3)
P 		21
avr 5.7
(-2.8) 		7.2
(-2.2) 		5.3
(-3) 		8.2
(-1.8) 		15.2
(1) 		20.3
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193995_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3644
Sequence Type Exemplar sequence
Representative Public ID M176.9 NCBI
Target Description M176.9 /REP_DB=WormBase Gene ID /WP=CE18899 /TR=Q9XTH2 /GB=CAA19543.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Src homology domain 2, tyrosine-protein kinase (FES-FPS subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061411
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M176.9 ENSEMBL cdna:pseudogene chromosome:CEL140:II:9409255:9411508:-1 gene:M176.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9409251-9410823(-) 96.73 100.0
Public Domain and Genome References
Ensembl M176.9
Sequence
Target Sequence 
>C. ELEGANS:193995_S_AT
gggacatcgccgccagaaattgtcttcttcacgagaacgaggtcaagatcaccgattttg
gattatctagagctggaccatcttatacaacaaagacatcttgtaagattcctataaagt
ggctcgcgcctgaaaccttggctactctgagcttctcatatgcaactgatgtttatagct
ggggagtcacttgctacgaagtcttcgtcgacggtgctgaaccatttgaaggtgtctcga
atgcaactatcaaggctgatatcatggctaacaatttctatccaatgccatcaatgactc
cagacgaagtaaaagagtacatgagcagttgtatttttgtcgaagaatctcgtcgagcca
caataccattggcagttgcagaatttgaacgatttgctcgaatgtgtgaagatgggacat
tacagatgggaaaagcgaaaaataggcttctggcagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACATCGCCGCCAGAAATTGTCT 551 493 908 Antisense
ATTATCTAGAGCTGGACCATCTTAT 640 13 969 Antisense
AAGATTCCTATAAAGTGGCTCGCGC 254 155 1012 Antisense
GATGTTTATAGCTGGGGAGTCACTT 689 409 1075 Antisense
TACGAAGTCTTCGTCGACGGTGCTG 318 649 1102 Antisense
GAAGGTGTCTCGAATGCAACTATCA 450 335 1135 Antisense
AACAATTTCTATCCAATGCCATCAA 173 135 1177 Antisense
TGAGCAGTTGTATTTTTGTCGAAGA 173 569 1229 Antisense
TCTCGTCGAGCCACAATACCATTGG 618 611 1255 Antisense
GAACGATTTGCTCGAATGTGTGAAG 463 347 1294 Antisense
GCGAAAAATAGGCTTCTGGCAGTTT 364 287 1342 Antisense
Sequence Source Affymetrix Proprietary Database