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[193994_at] transmembrane domain of family 1 of G-protein coupled receptors

Description AH9.1 /REP_DB=WormBase Gene ID /WP=CE03857 /TR=SW:Q10904 /GB=AAA82439.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transmembrane domain of family 1 of G-protein coupled receptors
Cluster 6grp_total > 13      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 204.7
(3)
P 		191.7
(2.1)
A 		158.8
(-0.1)
A 		116.9
(-3)
A 		88
B 208.2
(3)
P 		172.7
(0.3)
A 		134.2
(-2.6)
A 		129.4
(-3)
A 		79
C 251.4
(3)
P 		194.7
(0.5)
A 		114.4
(-3)
A 		168.5
(-0.6)
A 		137
avr 221.4
(3) 		186.4
(0.5) 		135.8
(-3) 		138.3
(-2.8) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 164.6
(1)
A 		221.3
(3)
A 		161.8
(0.9)
A 		172.7
(1.3)
A 		114.3
(-0.8)
A 		50.1
(-3)
A 		171
B 177.9
(2.5)
M 		188.5
(3)
P 		96.6
(-1.8)
A 		158.4
(1.4)
A 		112.6
(-0.9)
A 		72.7
(-3)
A 		116
C 270.3
(3)
P 		184.6
(0.5)
M 		161
(-0.1)
A 		172.2
(0.2)
A 		124.4
(-1.2)
P 		61.8
(-3)
A 		209
avr 204.3
(3) 		198.1
(2.7) 		139.8
(0.3) 		167.8
(1.5) 		117.1
(-0.7) 		61.5
(-3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 74.5
(3)
P 		41.6
(-0.4)
A 		41.5
(-0.4)
A 		17.1
(-3)
A 		57
B 66.4
(3)
P 		42.7
(-0.7)
A 		31.1
(-2.5)
A 		27.6
(-3)
A 		39
C 83.2
(3)
P 		56
(0)
A 		39.9
(-1.7)
A 		28.4
(-3)
A 		55
avr 74.7
(3) 		46.8
(-0.3) 		37.5
(-1.4) 		24.4
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 30.3
(-1.4)
A 		78.7
(3)
A 		35.2
(-0.9)
A 		43.8
(-0.1)
A 		34.5
(-1)
A 		12.2
(-3)
A 		67
B 61.9
(2.9)
M 		62.7
(3)
P 		23.5
(-3)
A 		41.9
(-0.2)
A 		45.8
(0.4)
A 		27.1
(-2.4)
A 		39
C 100.2
(3)
P 		56.3
(-0.3)
M 		41
(-1.5)
A 		34.6
(-2)
A 		40.2
(-1.5)
P 		20.7
(-3)
A 		80
avr 64.1
(2.8) 		65.9
(3) 		33.2
(-1.3) 		40.1
(-0.4) 		40.2
(-0.4) 		20
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18331
Sequence Type Exemplar sequence
Representative Public ID AH9.1 NCBI
Target Description AH9.1 /REP_DB=WormBase Gene ID /WP=CE03857 /TR=SW:Q10904 /GB=AAA82439.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transmembrane domain of family 1 of G-protein coupled receptors
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076013 NCBI Caenorhabditis elegans AH9.1 (AH9.1) mRNA, complete cds. 11/11 None
SNAP00000004858 ENSEMBL cdna:SNAP chromosome:CEL140:X:2243595:2247001:-1 11/11 None
GENEFINDER00000004869 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2243595:2245674:-1 11/11 None
AH9.1 ENSEMBL cdna:known chromosome:CEL140:X:2243595:2245674:-1 gene:AH9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2243594-2245674(-) 100.0 100.0
Public Domain and Genome References
Gene Title transmembrane domain of family 1 of G-protein coupled receptors
Ensembl AH9.1
Entrez Gene 181810 Entrez gene
SwissProt Q10904 EMBL-EBI
WormBase CE03857 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82439 Hypothetical protein AH9.1 [Caenorhabditis elegans] ref|NP_508414.1| AH9.1 [Caenorhabditis elegans] sp|Q10904|YWO1_CAEEL Probable G-protein coupled receptor AH9.1 0.0
blast CAE68332 Hypothetical protein CBG14052 [Caenorhabditis briggsae] 0.0
blast XP_625140 PREDICTED: similar to CG5936-PA [Apis mellifera] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.4E-8
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508414.1 7 10-32,39-61,76-98,128-147,188-205,247-269,279-301
AH9.1 7 10-32,39-61,76-98,128-147,188-205,247-269,279-301
SNAP00000004858 8 23-45,60-82,89-111,126-148,178-197,230-252,294-316,326-348
GENEFINDER00000004869 7 10-32,39-61,76-98,128-147,188-205,247-269,279-301
Sequence
Target Sequence 
>C. ELEGANS:193994_AT
ccgttctacttcttgttatcctgaacatgtgcgtcgttcgtggcctgcggaaaattgaca
aacgtaattggttctggagacagccatcacaaaacagtcggactgaaacattagctcaac
gccaacttcggtcgccgcgcgatgatcgcagtcgtatatcagttcttctgttcgttacat
ctgctacttttatcatctgcaatattcctgcctccgttatatctttcttcgttcgacgag
ttagtggttcattgttttggcagatattccgtgccattgcaaatcttcttcaagtcacaa
gttatctctacaacttctacctttatgctctgtgttcttctgaataccgtcacgcatttc
tccgactatttggatgtagatcaagcttatcgccaacttccactggcgactctccaaccg
ttcgagtctcagttcacggaaagcgatgtcatcaagctgtcgtccttcttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTTCTACTTCTTGTTATCCTGAA 223 265 590 Antisense
ACATTAGCTCAACGCCAACTTCGGT 206 105 697 Antisense
ATCGCAGTCGTATATCAGTTCTTCT 194 37 734 Antisense
GTTCGTTACATCTGCTACTTTTATC 14 443 759 Antisense
TATCATCTGCAATATTCCTGCCTCC 589 659 780 Antisense
ATCTCTACAACTTCTACCTTTATGC 536 31 893 Antisense
CCTTTATGCTCTGTGTTCTTCTGAA 123 269 909 Antisense
TCTGAATACCGTCACGCATTTCTCC 435 607 928 Antisense
TAGATCAAGCTTATCGCCAACTTCC 426 653 966 Antisense
TCCAACCGTTCGAGTCTCAGTTCAC 697 585 1002 Antisense
TCATCAAGCTGTCGTCCTTCTTGGA 560 619 1038 Antisense
Sequence Source Affymetrix Proprietary Database