[Home] | [Total List]

[193992_s_at] Diphthamide biosynthesis protein (diptheria resistance protein)

Description C09G5.2 /REP_DB=WormBase Gene ID /WP=CE15608 /TR=SW:Q09454 /GB=CAA86761.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Diphthamide biosynthesis protein (diptheria resistance protein)
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 240.4
(-3)
P 		279.3
(-0.9)
P 		318
(1.2)
P 		350.2
(3)
P 		110
B 288.7
(3)
P 		280.2
(1.6)
P 		253.4
(-3)
P 		267.9
(-0.5)
P 		35
C 267
(0.8)
P 		284.5
(3)
P 		275.2
(1.8)
P 		237.2
(-3)
P 		47
avr 265.4
(-3) 		281.3
(1.8) 		282.2
(2.1) 		285.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 185.9
(-3)
P 		228.7
(-1.6)
P 		196.2
(-2.7)
P 		293.2
(0.5)
P 		371.7
(3)
P 		372
(3)
P 		186
B 179.6
(-3)
P 		214
(-1.3)
P 		227.5
(-0.6)
P 		228.7
(-0.5)
P 		236.1
(-0.2)
P 		299.1
(3)
P 		120
C 152.3
(-3)
P 		252.6
(-0.7)
P 		274
(-0.2)
P 		192
(-2.1)
P 		313.9
(0.7)
P 		416.4
(3)
P 		264
avr 172.6
(-3) 		231.8
(-1.1) 		232.6
(-1.1) 		238
(-0.9) 		307.2
(1.3) 		362.5
(3) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 87.5
(3)
P 		60.6
(-1.5)
P 		83.1
(2.3)
P 		51.3
(-3)
P 		36
B 92
(3)
P 		69.2
(-0.9)
P 		58.7
(-2.7)
P 		57.1
(-3)
P 		35
C 88.4
(2.2)
P 		81.8
(1.5)
P 		95.9
(3)
P 		40
(-3)
P 		56
avr 89.3
(3) 		70.5
(0.2) 		79.2
(1.5) 		49.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 34.3
(-3)
P 		81.3
(0.6)
P 		42.7
(-2.4)
P 		74.4
(0.1)
P 		112.2
(3)
P 		90.6
(1.3)
P 		78
B 62.5
(-2.2)
P 		71.2
(-1.3)
P 		55.2
(-3)
P 		60.6
(-2.4)
P 		95.9
(1.3)
P 		111.5
(3)
P 		56
C 56.5
(-1.9)
P 		77.1
(-0.7)
P 		69.7
(-1.1)
P 		38.6
(-3)
P 		101.6
(0.8)
P 		139.4
(3)
P 		101
avr 51.1
(-3) 		76.5
(-0.6) 		55.9
(-2.5) 		57.9
(-2.3) 		103.2
(2) 		113.8
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193992_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2718
Sequence Type Exemplar sequence
Representative Public ID C09G5.2 NCBI
Target Description C09G5.2 /REP_DB=WormBase Gene ID /WP=CE15608 /TR=SW:Q09454 /GB=CAA86761.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Diphthamide biosynthesis protein (diptheria resistance protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063906 NCBI Caenorhabditis elegans C09G5.2 (C09G5.2) mRNA, complete cds. 11/11 None
SNAP00000014219 ENSEMBL cdna:SNAP chromosome:CEL140:II:10702560:10703422:-1 11/11 None
GENEFINDER00000014236 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10702560:10703422:-1 11/11 None
C09G5.2 ENSEMBL cdna:known chromosome:CEL140:II:10702490:10714206:-1 gene:C09G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10702556-10714203(-) 100.0 100.0
Public Domain and Genome References
Gene Title Diphthamide biosynthesis protein (diptheria resistance protein)
Ensembl C09G5.2
Entrez Gene 174649 Entrez gene
SwissProt Q09454 EMBL-EBI
WormBase CE15608 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86761 Hypothetical protein C09G5.2 [Caenorhabditis elegans] ref|NP_496307.1| C09G5.2 [Caenorhabditis elegans] sp|Q09454|YQ32_CAEEL Hypothetical protein C09G5.2 in chromosome II 0.0
blast CAE59616 Hypothetical protein CBG03025 [Caenorhabditis briggsae] 0.0
blast CAA86761 Hypothetical protein C09G5.2 [Caenorhabditis elegans] ref|NP_496307.1| C09G5.2 [Caenorhabditis elegans] sp|Q09454|YQ32_CAEEL Hypothetical protein C09G5.2 in chromosome II 1.0E-110
blast CAE59616 Hypothetical protein CBG03025 [Caenorhabditis briggsae] 2.0E-95
blast AAH77348 MGC81125 protein [Xenopus laevis] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002728 EMBL-EBI Diphthamide synthesis DPH2 protein 3.1E-69
Pfam IPR002728 EMBL-EBI Diphthamide synthesis DPH2 protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193992_S_AT
tctccttcgcaaacgactttttctagtggaaaagctgaaggatgcggacactgtcggact
ggtcgttggcagtgtcggagtcgataagcatcgtgaagcggtaaaacgaatgcgtgagat
gtgcaagaaagccggaaagaaaatttatgttatctcagttggaaagatcaatgttccgaa
attgtcgaatttttccaccgatatcgatgtctttgtgcttctctcgtgtccatttggcgt
tgtacttgattcatccgattacttcagacctgtcgtgtcatattttgaagctgaaatcgc
cttgaatccagcaaaaacgtgggcagcagactttggttggtcggccgagttcgccgcgtt
ccttgaagacaaaatcgaaacggaagtgccagacgacaaggccgccggagatttcagttt
gatttctggaaaagttcgtgttcagaagacagaggaggagaaaaatggagatggtccgag
ttctgttgcaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCTTCGCAAACGACTTTTTCTA 645 597 825 Antisense
AGGATGCGGACACTGTCGGACTGGT 58 57 863 Antisense
GGTCGTTGGCAGTGTCGGAGTCGAT 154 503 885 Antisense
GATATCGATGTCTTTGTGCTTCTCT 26 427 1024 Antisense
TCTCTCGTGTCCATTTGGCGTTGTA 167 611 1044 Antisense
TTGGCGTTGTACTTGATTCATCCGA 374 683 1058 Antisense
TTCATCCGATTACTTCAGACCTGTC 516 687 1074 Antisense
ACGTGGGCAGCAGACTTTGGTTGGT 532 93 1141 Antisense
TTCGCCGCGTTCCTTGAAGACAAAA 79 695 1174 Antisense
GGAAGTGCCAGACGACAAGGCCGCC 533 531 1206 Antisense
GATGGTCCGAGTTCTGTTGCAATCT 700 407 1294 Antisense
Sequence Source Affymetrix Proprietary Database