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[193991_at] calcium channel protein alpha-1 chain isoform (PIR:A41098) (weak)

Description F41G3.3 /REP_DB=WormBase Gene ID /WP=CE01287 /TR=Q20292 /GB=AAA81110.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=calcium channel protein alpha-1 chain isoform (PIR:A41098) (weak)
Cluster 6grp_high1_10_10 > 44      6grp_total > 10      4grp_total > 57      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 32
(-3)
A 		102.7
(2.3)
A 		112.2
(3)
P 		75.7
(0.3)
A 		80
B 26
(-1.7)
A 		87.8
(3)
M 		87.6
(3)
A 		9.4
(-3)
A 		78
C 51
(-1.2)
A 		108.9
(2)
M 		126.9
(3)
P 		18.1
(-3)
A 		109
avr 36.3
(-2.8) 		99.8
(2.3) 		108.9
(3) 		34.4
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 68.5
(-1.2)
A 		71.4
(-0.5)
P 		84.6
(3)
M 		80.8
(2)
A 		61.7
(-3)
A 		71.6
(-0.4)
A 		23
B 51.5
(-3)
P 		82.9
(3)
A 		74
(1.3)
P 		51.9
(-2.9)
P 		67.7
(0.1)
P 		74.5
(1.4)
P 		31
C 47.3
(-3)
A 		105.2
(3)
P 		90.3
(1.5)
A 		90.6
(1.5)
A 		72.9
(-0.3)
A 		67.5
(-0.9)
P 		58
avr 55.8
(-3) 		86.5
(3) 		83
(2.3) 		74.4
(0.6) 		67.4
(-0.7) 		71.2
(0) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 11.6
(-2.8)
A 		22.3
(0.7)
A 		29.3
(3)
P 		11.1
(-3)
A 		18
B 8.3
(-1.1)
A 		21.7
(3)
M 		20.3
(2.6)
A 		2
(-3)
A 		20
C 16.9
(-1)
A 		31.3
(1.1)
M 		44.2
(3)
P 		3
(-3)
A 		41
avr 12.3
(-1.4) 		25.1
(1.6) 		31.3
(3) 		5.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.6
(-3)
A 		25.4
(3)
P 		18.4
(-0.3)
M 		20.5
(0.7)
A 		18.6
(-0.2)
A 		17.4
(-0.8)
A 		13
B 17.9
(-1.2)
P 		27.6
(2.9)
A 		18
(-1.2)
P 		13.7
(-3)
P 		27.5
(2.9)
P 		27.8
(3)
P 		14
C 17.5
(-3)
A 		32.1
(3)
P 		23
(-0.7)
A 		18.2
(-2.7)
A 		23.6
(-0.5)
A 		22.6
(-0.9)
P 		15
avr 16
(-3) 		28.4
(3) 		19.8
(-1.2) 		17.5
(-2.3) 		23.2
(0.5) 		22.6
(0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4595
Sequence Type Exemplar sequence
Representative Public ID F41G3.3 NCBI
Target Description F41G3.3 /REP_DB=WormBase Gene ID /WP=CE01287 /TR=Q20292 /GB=AAA81110.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=calcium channel protein alpha-1 chain isoform (PIR:A41098) (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062981 NCBI Caenorhabditis elegans F41G3.3 (F41G3.3) mRNA, complete cds. 11/11 None
SNAP00000017948 ENSEMBL cdna:SNAP chromosome:CEL140:II:6756411:6758856:1 11/11 None
GENEFINDER00000017961 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6756525:6758856:1 11/11 None
F41G3.3 ENSEMBL cdna:known chromosome:CEL140:II:6756411:6758856:1 gene:F41G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6756406-6758852(+) 100.0 100.0
Public Domain and Genome References
Gene Title calcium channel protein alpha-1 chain isoform (PIR:A41098) (weak)
Ensembl F41G3.3
Entrez Gene 3564882 Entrez gene
SwissProt Q20292 EMBL-EBI
WormBase CE01287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81110 Hypothetical protein F41G3.3 [Caenorhabditis elegans] ref|NP_495382.1| F41G3.3 [Caenorhabditis elegans] 0.0
blast CAE65962 Hypothetical protein CBG11145 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:193991_AT
gtggctcatttgacaggagctccaccagctccaccacttccagcacaacaaccaccacca
gttgctcattcttctcaaattccacaaaaacagcaacatcctcaaatgcaaaaacaacaa
agtcgggaggagcatgacaaaatgtctgacaaaagtcatgaggaagagcacacaagtgtc
tctactgattctgcactttgttctgaaacttcagaagttcgtggcccatccccatataaa
cttccatttgattcacaaaaacccggagaattgtcagaagaagctgagaaactcttgttt
tatttcaagacacacaaggaagttttgaattatttgggaattgggttaactgatcggctt
tggaaacatatccaaaagcttccaagttttgaaacttcaattcgagttttcaaaaagcaa
gatgaaatttcatcaaagccaccaccagcaccaccgcttattcaaaattctctaacacca
ctacaaggatcaaatgttccagcagctccaaagattactgtcagccaatcatttgctcag
caggatagagatagaaagagcccaatcggacattcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTCATTTGACAGGAGCTCCAC 58 493 1126 Antisense
AGTTGCTCATTCTTCTCAAATTCCA 300 65 1185 Antisense
AGCACACAAGTGTCTCTACTGATTC 348 77 1292 Antisense
CTACTGATTCTGCACTTTGTTCTGA 622 225 1307 Antisense
CCATCCCCATATAAACTTCCATTTG 413 271 1351 Antisense
ATTGGGTTAACTGATCGGCTTTGGA 519 1 1465 Antisense
TGAAATTTCATCAAAGCCACCACCA 169 573 1548 Antisense
TTCAAAATTCTCTAACACCACTACA 86 687 1586 Antisense
GCAGCTCCAAAGATTACTGTCAGCC 646 313 1627 Antisense
ACTGTCAGCCAATCATTTGCTCAGC 575 97 1642 Antisense
GAAAGAGCCCAATCGGACATTCACA 108 361 1679 Antisense
Sequence Source Affymetrix Proprietary Database