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[193986_s_at] Erythrocyte band 7 integral membrane protein (human)

Description F08C6.4 /REP_DB=WormBase Gene ID /WP=CE27924 /GEN=sto-1 /TR=SW:Q19200 /GB=AAA68723.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Erythrocyte band 7 integral membrane protein (human)
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 94      6grp_total > 89      4grp_total > 18      6grp_highest_sub > Cu      6grp_cgc > 69      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 261.4
(-3)
P 		346.7
(-0.1)
P 		260.4
(-3)
P 		437.5
(3)
P 		177
B 286.8
(-2.8)
P 		375.8
(-1)
P 		279.3
(-3)
P 		574.2
(3)
P 		295
C 278.3
(-2.1)
P 		366
(-0.2)
P 		237.9
(-3)
P 		510.2
(3)
P 		272
avr 275.5
(-2.6) 		362.8
(-0.5) 		259.2
(-3) 		507.3
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 433.7
(-1.5)
P 		406.4
(-1.8)
P 		266.6
(-3)
P 		369
(-2.1)
P 		765.1
(1.3)
P 		956.6
(3)
P 		690
B 455.8
(-1.3)
P 		371.7
(-2.1)
P 		283
(-3)
P 		406.6
(-1.8)
P 		733
(1.4)
P 		892.1
(3)
P 		609
C 586.4
(-0.5)
P 		431.5
(-2)
P 		326.3
(-3)
P 		370.7
(-2.6)
P 		803.3
(1.5)
P 		960.3
(3)
P 		634
avr 492
(-1.1) 		403.2
(-2) 		292
(-3) 		382.1
(-2.2) 		767.1
(1.4) 		936.3
(3) 		644
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 95.2
(3)
P 		75.3
(-0.8)
P 		68.1
(-2.2)
P 		64
(-3)
P 		31
B 91.5
(-0.2)
P 		92.8
(-0.1)
P 		64.7
(-3)
P 		122.4
(3)
P 		58
C 92.1
(-0.5)
P 		105.2
(3)
P 		82.9
(-3)
P 		86
(-2.2)
P 		22
avr 92.9
(3) 		91.1
(2.5) 		71.9
(-3) 		90.8
(2.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 79.9
(-2.3)
P 		144.5
(-0)
P 		58.1
(-3)
P 		93.6
(-1.8)
P 		230.9
(2.9)
P 		232.9
(3)
P 		175
B 158.6
(-1)
P 		123.7
(-1.7)
P 		68.7
(-3)
P 		107.7
(-2.1)
P 		297.8
(2.2)
P 		332.6
(3)
P 		264
C 217.3
(0.5)
P 		131.7
(-1.6)
P 		83
(-2.8)
P 		74.5
(-3)
P 		259.9
(1.5)
P 		321.5
(3)
P 		247
avr 151.9
(-0.8) 		133.3
(-1.3) 		69.9
(-3) 		91.9
(-2.4) 		262.9
(2.1) 		295.7
(3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193986_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16535
Sequence Type Exemplar sequence
Representative Public ID F08C6.4 NCBI
Target Description F08C6.4 /REP_DB=WormBase Gene ID /WP=CE27924 /GEN=sto-1 /TR=SW:Q19200 /GB=AAA68723.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Erythrocyte band 7 integral membrane protein (human)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076880 NCBI Caenorhabditis elegans STOmatin family member (sto-1) (sto-1) mRNA, complete cds. 11/11 None
SNAP00000044576 ENSEMBL cdna:SNAP chromosome:CEL140:X:7562834:7564396:1 11/11 None
GENEFINDER00000044587 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7562834:7564396:1 11/11 None
F08C6.4 ENSEMBL cdna:known chromosome:CEL140:X:7562780:7564693:1 gene:F08C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7563275-7564395(+) 100.0 100.0
Public Domain and Genome References
Gene Title Erythrocyte band 7 integral membrane protein (human)
Gene Symbol sto-1
Ensembl F08C6.4
Entrez Gene 181017 Entrez gene
SwissProt Q19200 EMBL-EBI
WormBase CE27924 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68723 Stomatin protein 1 [Caenorhabditis elegans] ref|NP_509281.1| STOmatin family member (sto-1) [Caenorhabditis elegans] sp|Q19200|STO1_CAEEL Stomatin protein 1.0E-160
blast T15971 hypothetical protein F08C6.4 - Caenorhabditis elegans 1.0E-129
blast CAE70240 Hypothetical protein CBG16729 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 2.7E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509281.1 1 45-67
F08C6.4 1 45-67
SNAP00000044576 1 45-67
GENEFINDER00000044587 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:193986_S_AT
tcggttaccgtttctgttgacgcagttgtctacttcaaggtgtttgacccaatcacttcg
gtcgtcggagttggcaatgcgaccgactctaccaaacttttggctcaaaccaccctccgt
acaattctcggtacccataccctttcagaaattctatccgaccgtgagaaaatctccgcc
gacatgaaaatctcgctcgatgaagctacagagccatggggaatcaaggttgaacgtgtc
gagcttcgcgatgtccgtcttccatctcaaatgcaacgtgctatggctgctgaagccgag
gctactcgtgatgctggagcaaagattatcgctgccgaaggagaattaagagcatctgcc
gctcttgctgaagccgccaccatcatttcaaaaagcgagggagccatgcagcttcgatat
ctgcacacactcaatgctatcagttccgagaaaaccagcacaatcatcttcccgttccca
atggagattctcggaggaatcagcaaggttggttcaggaggcacatctcagaactttcca
gttcaagaaatgatgaatgccgcccttcaatccattcaacgtcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTTACCGTTTCTGTTGACGCAG 11 577 229 Antisense
GACGCAGTTGTCTACTTCAAGGTGT 235 381 247 Antisense
AGGTGTTTGACCCAATCACTTCGGT 490 1 266 Antisense
TCACTTCGGTCGTCGGAGTTGGCAA 691 599 281 Antisense
TGAACGTGTCGAGCTTCGCGATGTC 614 573 459 Antisense
TCCGTCTTCCATCTCAAATGCAACG 396 595 482 Antisense
CCGAGGCTACTCGTGATGCTGGAGC 171 265 524 Antisense
CAGCTTCGATATCTGCACACACTCA 501 203 637 Antisense
TCTTCCCGTTCCCAATGGAGATTCT 88 617 695 Antisense
GAGGCACATCTCAGAACTTTCCAGT 431 405 746 Antisense
GCCCTTCAATCCATTCAACGTCAGG 211 283 790 Antisense
Sequence Source Affymetrix Proprietary Database