[Home] | [Total List]

[193984_s_at] transitional endoplasmic reticulum ATPase homolog 1 (P97 protein)

Description C06A1.1 /REP_DB=WormBase Gene ID /WP=CE02114 /TR=SW:P54811 /GB=CAA90050.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transitional endoplasmic reticulum ATPase homolog 1 (P97 protein)
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 68      6grp_total > 98      4grp_total > 41      6grp_highest_sub > Cu      6grp_cgc > 69      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1266
1 2 3 4 range
A 2504.2
(-3)
P 		3256.8
(3)
P 		3201.7
(2.6)
P 		3057.9
(1.4)
P 		753
B 2593.4
(-3)
P 		3357.6
(1.8)
P 		3539.7
(3)
P 		3268.4
(1.3)
P 		946
C 2273.7
(-3)
P 		3112.7
(3)
P 		3094.2
(2.9)
P 		2904.8
(1.5)
P 		839
avr 2457.1
(-3) 		3242.4
(2.7) 		3278.5
(3) 		3077
(1.5) 		821

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1527
1 2 3 4 5 6 range
A 1965.6
(-1.3)
P 		2219.7
(-0)
P 		1623.6
(-3)
P 		2175.9
(-0.2)
P 		2187.6
(-0.2)
P 		2818.9
(3)
P 		1195
B 1939.5
(0.6)
P 		1792.5
(-0.2)
P 		1292.1
(-3)
P 		2156.6
(1.8)
P 		2156.1
(1.8)
P 		2377.3
(3)
P 		1085
C 2383.2
(1)
P 		1709.3
(-3)
P 		2557.4
(2.1)
P 		1929.6
(-1.7)
P 		2714.7
(3)
P 		2206.7
(-0)
P 		1005
avr 2096.1
(-0.5) 		1907.2
(-2.2) 		1824.4
(-3) 		2087.4
(-0.5) 		2352.8
(1.9) 		2467.6
(3) 		643
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 911.8
(3)
P 		707
(0.4)
P 		837
(2)
P 		447.6
(-3)
P 		464
B 827
(2.9)
P 		829.3
(3)
P 		820.2
(2.6)
P 		696.5
(-3)
P 		133
C 752.7
(-0.3)
P 		894.9
(1.1)
P 		1078.4
(3)
P 		489.8
(-3)
P 		589
avr 830.5
(1.7) 		810.4
(1.3) 		911.9
(3) 		544.6
(-3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 362.3
(-2.9)
P 		789.4
(3)
P 		353.6
(-3)
P 		551.9
(-0.3)
P 		660.1
(1.2)
P 		686.3
(1.6)
P 		436
B 674.9
(0.8)
P 		596.6
(-0)
P 		313.8
(-3)
P 		571.2
(-0.3)
P 		876
(2.9)
P 		886.5
(3)
P 		573
C 883.3
(3)
P 		521.6
(-1.4)
P 		650.9
(0.2)
P 		388
(-3)
P 		878.4
(2.9)
P 		738.7
(1.2)
P 		495
avr 640.2
(0.3) 		635.9
(0.2) 		439.4
(-3) 		503.7
(-1.9) 		804.8
(3) 		770.5
(2.4) 		365
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193984_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3145
Sequence Type Exemplar sequence
Representative Public ID C06A1.1 NCBI
Target Description C06A1.1 /REP_DB=WormBase Gene ID /WP=CE02114 /TR=SW:P54811 /GB=CAA90050.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transitional endoplasmic reticulum ATPase homolog 1 (P97 protein)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063872 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-48.1) (cdc-48.1) mRNA, complete cds. 11/11 None
SNAP00000011341 ENSEMBL cdna:SNAP chromosome:CEL140:II:10560243:10563300:-1 11/11 None
GENEFINDER00000011351 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10560243:10563300:-1 11/11 None
C06A1.1 ENSEMBL cdna:known chromosome:CEL140:II:10559928:10563317:-1 gene:C06A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10560239-10563297(-) 100.0 100.0
Public Domain and Genome References
Gene Title transitional endoplasmic reticulum ATPase homolog 1 (P97 protein)
Gene Symbol cdc-48.1
Ensembl C06A1.1
Entrez Gene 174624 Entrez gene
SwissProt P54811 EMBL-EBI
WormBase CE02114 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13205_AT cell division cycle protein 48 (CDC48A) (CDC48) at
ATH1-121501:258649_AT cell division cycle protein 48 (CDC48A) (CDC48) at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90050 Hypothetical protein C06A1.1 [Caenorhabditis elegans] ref|NP_496273.1| Cell Division Cycle related family member (cdc-48.1) [Caenorhabditis elegans] sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1 (p97/CDC48 homolog 1) 0.0
blast CAE59655 Hypothetical protein CBG03070 [Caenorhabditis briggsae] 0.0
blast CAA88314 Hypothetical protein C41C4.8 [Caenorhabditis elegans] emb|CAA88105.1| Hypothetical protein C41C4.8 [Caenorhabditis elegans] ref|NP_495705.1| Cell Division Cycle related family member (cdc-48.2) [Caenorhabditis elegans] sp|P54812|TERA2_CAEEL Transitional endoplasmic reticulum ATPase homolog 2 (p97/CDC48 homolog 2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 7.3E-93
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 6.3E-97
Pfam IPR003338 EMBL-EBI AAA ATPase VAT, N-terminal 2.7E-36
Sequence
Target Sequence 
>C. ELEGANS:193984_S_AT
ggaggtgcatcggatcgtgtaatcaatcaagtgctcaccgaaatggatggaatgaacgcg
aagaaaaatgtgttcatcatcggagctacaaacagacctgatatcattgatccagctgtt
cttcgtccaggtcgccttgatcagcttatctacatcccactcccagacgaagcttctcgg
caccaaattttgaaagcttctcttcgtaaaaccccactctccaaggatcttgacttgacc
ttcttggccaaaaacactgttggattctctggagccgatttgaccgaaatttgtcagaga
gcgtgtaagctggctattcgcgaatcgatcgaaaaggaaattcggattgagaaggaacgt
caagatcgccaagctcgcggtgaggagctcatggaagacgatgcagttgatccagtacca
gaaattactcgtgctcacttcgaggaagccatgaagtttgccagacgctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTGCATCGGATCGTGTAATCA 264 517 1813 Antisense
TTGATCAGCTTATCTACATCCCACT 199 705 1949 Antisense
CCCACTCTCCAAGGATCTTGACTTG 147 257 2025 Antisense
TTGACTTGACCTTCTTGGCCAAAAA 14 703 2042 Antisense
AAAACACTGTTGGATTCTCTGGAGC 564 129 2063 Antisense
TCTCTGGAGCCGATTTGACCGAAAT 459 593 2078 Antisense
TGTAAGCTGGCTATTCGCGAATCGA 493 557 2116 Antisense
GAACGTCAAGATCGCCAAGCTCGCG 31 349 2167 Antisense
ACGATGCAGTTGATCCAGTACCAGA 379 93 2210 Antisense
TACCAGAAATTACTCGTGCTCACTT 278 651 2228 Antisense
GCCATGAAGTTTGCCAGACGCTCTG 477 279 2260 Antisense
Sequence Source Affymetrix Proprietary Database