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[193979_s_at]

Description M176.6 /REP_DB=WormBase Gene ID /WP=CE12470 /GEN=kin-15 /TR=SW:P34891 /GB=CAB01648.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily)
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 62      6grp_total > 41      4grp_total > 51      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1160
1 2 3 4 range
A 765.4
(0.4)
P 		1275
(3)
P 		687.9
(-0)
P 		114.6
(-3)
P 		1160
B 814.2
(1)
P 		1147.6
(3)
P 		724.6
(0.5)
P 		127.2
(-3)
P 		1020
C 840.7
(1.5)
P 		1083
(3)
P 		802.2
(1.2)
P 		143.2
(-3)
P 		940
avr 806.8
(0.9) 		1168.5
(3) 		738.2
(0.5) 		128.3
(-3) 		1040

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 810
1 2 3 4 5 6 range
A 516.2
(-0.1)
P 		515.3
(-0.1)
P 		940.1
(3)
P 		627.4
(0.7)
P 		234.3
(-2.2)
P 		130.4
(-3)
P 		810
B 477.9
(-0.2)
P 		597.1
(0.7)
P 		875.9
(3)
P 		601.8
(0.8)
P 		246.2
(-2.1)
P 		138.8
(-3)
P 		737
C 319.1
(-1.1)
P 		581.1
(2)
P 		663
(3)
P 		606.8
(2.3)
P 		184.4
(-2.7)
P 		161.3
(-3)
P 		502
avr 437.7
(-0.4) 		564.5
(0.7) 		826.3
(3) 		612
(1.1) 		221.6
(-2.3) 		143.5
(-3) 		683
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 278.7
(3)
P 		276.8
(3)
P 		179.8
(0.7)
P 		16.8
(-3)
P 		262
B 259.6
(2.4)
P 		283.4
(3)
P 		167.9
(0.3)
P 		27.1
(-3)
P 		256
C 278.3
(2.3)
P 		311.4
(3)
P 		279.6
(2.3)
P 		24.1
(-3)
P 		287
avr 272.2
(2.6) 		290.5
(3) 		209.1
(1.2) 		22.7
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 95.2
(-0.8)
P 		183.3
(2.3)
P 		204.7
(3)
P 		159.1
(1.4)
P 		70.7
(-1.7)
P 		31.8
(-3)
P 		173
B 166.3
(1.3)
P 		198.7
(2.5)
P 		212.7
(3)
P 		159.4
(1)
P 		100
(-1.2)
P 		51.8
(-3)
P 		161
C 118.3
(0.1)
P 		177.3
(3)
P 		168.8
(2.6)
P 		122
(0.3)
P 		59.7
(-2.7)
P 		54
(-3)
P 		123
avr 126.6
(0.2) 		186.4
(2.6) 		195.4
(3) 		146.8
(1) 		76.8
(-1.8) 		45.9
(-3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193979_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3031
Sequence Type Exemplar sequence
Representative Public ID M176.6 NCBI
Target Description M176.6 /REP_DB=WormBase Gene ID /WP=CE12470 /GEN=kin-15 /TR=SW:P34891 /GB=CAB01648.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase (KIN15-KIN16 subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171029(11), NM_171855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171029 NCBI Caenorhabditis elegans protein KINase family member (kin-15) (kin-15) mRNA, complete cds. 11/11 None
NM_171855 NCBI Caenorhabditis elegans protein KINase family member (kin-15) (kin-15) mRNA, complete cds. 11/11 None
SNAP00000025005 ENSEMBL cdna:SNAP chromosome:CEL140:II:9431351:9433252:-1 11/11 None
GENEFINDER00000025017 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9431351:9433523:-1 11/11 None
M176.6a ENSEMBL cdna:known chromosome:CEL140:II:9431351:9433523:-1 gene:M176.6 11/11 None
M176.6b ENSEMBL cdna:known chromosome:CEL140:II:9431351:9433619:-1 gene:M176.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9431347-9433520(-) 100.0 100.0
Public Domain and Genome References
Ensembl M176.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD24482 Hypothetical protein M176.6b [Caenorhabditis elegans] ref|NP_741034.1| protein KINase family member (kin-15) [Caenorhabditis elegans] 0.0
blast CAB01648 Hypothetical protein M176.6a [Caenorhabditis elegans] ref|NP_741035.1| protein KINase family member (kin-15) [Caenorhabditis elegans] pir||C88264 protein kin-15 [imported] - Caenorhabditis elegans 0.0
blast P34891 Receptor-like tyrosine-protein kinase kin-15 precursor gb|AAA28151.1| protein-tyrosine kinase 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-53
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-53
Pfam IPR000719 EMBL-EBI Protein kinase 1.4E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741035.1 1 47-66
M176.6a 1 47-66
GENEFINDER00000025017 1 47-66
Sequence
Target Sequence 
>C. ELEGANS:193979_S_AT
tcttgactcactttgcacgtctgaccttctttctttttcatatcaaatagctgaaggaat
ggagtatttagcatctattccgtgtgttcaccgtgatttggctctacgcaatgttcttct
caacaagaacaaaactattcgaatcgcggatttcggactagcaagaaagtatcaagtaga
tggctattatagaataacgaaaggtgtaggaactcctatgcctgctagatggatggctcc
agaagttatgagagaaggaaaatgcacagaaaaatcggatgtgtggtcgtatggtgttag
tctttatgaaatgttctcattgggagaattaccatattcaaatgtatccaacagtgatgt
ttttgagcatgttgttcagggaaatcaacttccaatgccacagtattgtcatcctaaaat
gtacgatcgaatgaaacaattttggaatttcgatgcaacatttcgacccagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGACTCACTTTGCACGTCTGAC 193 619 861 Antisense
CTGACCTTCTTTCTTTTTCATATCA 692 237 881 Antisense
TTAGCATCTATTCCGTGTGTTCACC 35 683 928 Antisense
ATTTGGCTCTACGCAATGTTCTTCT 125 19 956 Antisense
GAATCGCGGATTTCGGACTAGCAAG 227 327 1001 Antisense
GGTGTAGGAACTCCTATGCCTGCTA 325 499 1063 Antisense
ATGCCTGCTAGATGGATGGCTCCAG 567 41 1078 Antisense
GTGTGGTCGTATGGTGTTAGTCTTT 154 489 1141 Antisense
GAAATCAACTTCCAATGCCACAGTA 384 363 1241 Antisense
AATGCCACAGTATTGTCATCCTAAA 386 167 1254 Antisense
TCGATGCAACATTTCGACCCAGCTT 528 603 1310 Antisense
Sequence Source Affymetrix Proprietary Database