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[193976_s_at] ADP-ribosylation factor 1-directed GTPase activating protein

Description K02B12.7 /REP_DB=WormBase Gene ID /WP=CE11618 /TR=P90904 /GB=CAB00036.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ADP-ribosylation factor 1-directed GTPase activating protein
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 73      6grp_total > 49      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 493.1
(-1.2)
P 		389.4
(-3)
P 		467.1
(-1.7)
P 		738.8
(3)
P 		349
B 370.5
(-3)
P 		459.6
(-1.5)
P 		666.4
(1.9)
P 		734.2
(3)
P 		364
C 413.6
(-3)
P 		550.3
(-0.1)
P 		676.4
(2.6)
P 		695.9
(3)
P 		282
avr 425.7
(-3) 		466.4
(-2.2) 		603.3
(0.6) 		723
(3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 486.8
(0)
P 		440.8
(-1.8)
P 		562
(3)
P 		409.4
(-3)
P 		511.7
(1)
P 		476.1
(-0.4)
P 		153
B 625.1
(2.2)
P 		533.3
(-0.6)
P 		452.2
(-3)
P 		456.5
(-2.9)
P 		540.3
(-0.3)
P 		651.2
(3)
P 		199
C 637.9
(3)
P 		545.4
(0.1)
P 		446.1
(-3)
P 		482
(-1.9)
P 		515.2
(-0.8)
P 		634.8
(2.9)
P 		192
avr 583.3
(2.8) 		506.5
(-0.5) 		486.8
(-1.4) 		449.3
(-3) 		522.4
(0.2) 		587.4
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 179.5
(3)
P 		84.5
(-3)
P 		122.1
(-0.6)
P 		108.1
(-1.5)
P 		95
B 118.2
(-2.3)
P 		113.5
(-3)
P 		154.4
(2.7)
P 		156.5
(3)
P 		43
C 136.9
(-2)
P 		158.2
(-0.9)
P 		235.7
(3)
P 		117.3
(-3)
P 		118
avr 144.9
(0) 		118.7
(-3) 		170.7
(3) 		127.3
(-2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 89.7
(-3)
P 		156.8
(3)
P 		122.4
(-0.1)
P 		103.8
(-1.7)
P 		154.4
(2.8)
P 		115.9
(-0.7)
P 		67
B 217.5
(1.9)
P 		177.5
(0.1)
P 		109.8
(-3)
P 		120.9
(-2.5)
P 		219.5
(1.9)
P 		242.8
(3)
P 		133
C 236.4
(3)
P 		166.4
(-0)
P 		113.6
(-2.3)
P 		96.9
(-3)
P 		166.7
(0)
P 		212.5
(2)
P 		140
avr 181.2
(2.3) 		166.9
(1.3) 		115.3
(-2.4) 		107.2
(-3) 		180.2
(2.3) 		190.4
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193976_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1948
Sequence Type Exemplar sequence
Representative Public ID K02B12.7 NCBI
Target Description K02B12.7 /REP_DB=WormBase Gene ID /WP=CE11618 /TR=P90904 /GB=CAB00036.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ADP-ribosylation factor 1-directed GTPase activating protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059909 NCBI Caenorhabditis elegans K02B12.7 (K02B12.7) mRNA, complete cds. 11/11 None
SNAP00000001149 ENSEMBL cdna:SNAP chromosome:CEL140:I:8535127:8537396:-1 11/11 None
GENEFINDER00000001159 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8535127:8537396:-1 11/11 None
K02B12.7 ENSEMBL cdna:known chromosome:CEL140:I:8534886:8537396:-1 gene:K02B12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8535057-8537327(-) 100.0 100.0
Public Domain and Genome References
Gene Title ADP-ribosylation factor 1-directed GTPase activating protein
Ensembl K02B12.7
Entrez Gene 172643 Entrez gene
SwissProt P90904 EMBL-EBI
WormBase CE11618 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251905_AT ARF GAP-like zinc finger-containing protein ZIGA2 (ZIGA2) at
CANINE_2:CFAAFFX.19867.1.S1_AT similar to ADP-ribosylation factor GTPase activating protein 1 isoform b cfa
CANINE_2:CFAAFFX.19867.1.S1_S_AT similar to ADP-ribosylation factor GTPase activating protein 1 isoform b cfa
DROSOPHILA_2:1641630_AT GTPase-activating protein 69C dm
DROSGENOME1:143940_AT GTPase-activating protein 69C dm
CHICKEN:GGAAFFX.26601.1.S1_S_AT ADP-ribosylation factor GTPase activating protein 1 gga
CHICKEN:GGA.5835.1.S1_AT Similar to ADP-ribosylation factor 1 GTPase activating protein gga
HG-U133_PLUS_2:217888_S_AT ADP-ribosylation factor GTPase activating protein 1 hs
HG-U133A_2:217888_S_AT ADP-ribosylation factor GTPase activating protein 1 hs
HG-U133A:217888_S_AT ADP-ribosylation factor GTPase activating protein 1 hs
HU35KSUBA:RC_AA477263_AT ADP-ribosylation factor GTPase activating protein 1 hs
U133_X3P:G8922651_3P_A_AT ADP-ribosylation factor GTPase activating protein 1 hs
U133_X3P:HS.25584.1.S1_3P_A_AT ADP-ribosylation factor GTPase activating protein 1 hs
HG-U133_PLUS_2:234001_S_AT ADP-ribosylation factor GTPase activating protein 1 hs
HG-U133B:234001_S_AT ADP-ribosylation factor GTPase activating protein 1 hs
HG-U95B:57162_AT ADP-ribosylation factor GTPase activating protein 1 hs
HG-U95C:64332_AT ADP-ribosylation factor GTPase activating protein 1 hs
HU35KSUBA:AA402828_AT ADP-ribosylation factor GTPase activating protein 1 hs
HU35KSUBC:RC_AA402680_AT ADP-ribosylation factor GTPase activating protein 1 hs
MG-U74BV2:112374_AT ADP-ribosylation factor GTPase activating protein 1 mm
MOE430A:1427245_AT ADP-ribosylation factor GTPase activating protein 1 mm
MOUSE430A_2:1427245_AT ADP-ribosylation factor GTPase activating protein 1 mm
MOUSE430_2:1427245_AT ADP-ribosylation factor GTPase activating protein 1 mm
MOE430B:1445067_AT ADP-ribosylation factor GTPase activating protein 1 mm
MOUSE430_2:1445067_AT ADP-ribosylation factor GTPase activating protein 1 mm
MU19KSUBA:TC20215_AT ADP-ribosylation factor GTPase activating protein 1 (Arfgap1), mRNA mm
MU19KSUBA:TC20215_G_AT ADP-ribosylation factor GTPase activating protein 1 (Arfgap1), mRNA mm
MU19KSUBC:TC36860_AT ADP-ribosylation factor GTPase activating protein 1 (Arfgap1), mRNA mm
RG-U34A:U35776_AT ADP-ribosylation factor GTPase activating protein 1 rn
RAE230A:1370364_AT ADP-ribosylation factor GTPase activating protein 1 rn
RAT230_2:1370364_AT ADP-ribosylation factor GTPase activating protein 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00036 Hypothetical protein K02B12.7 [Caenorhabditis elegans] ref|NP_492310.1| K02B12.7 [Caenorhabditis elegans] 0.0
blast CAE67110 Hypothetical protein CBG12524 [Caenorhabditis briggsae] 1.0E-164
blast BAE22128.1 unnamed protein product [Mus musculus] dbj|BAE40469.1| unnamed protein product [Mus musculus] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 9.2E-62
Sequence
Target Sequence 
>C. ELEGANS:193976_S_AT
atgggctggtctatgctttcaaaaggagcttctcaagctgcagcgatggcaaaagacgtt
ggaattcaagctcagcagaaagcgtcacagttaagcgagaatgtgtctcaaaacaattca
ctatttggtggtgtcgcgaacaaagcatcagaagttggaactaaatcctgggatggatta
tcttcattcgtaaaatcaccttctctcaatgccttctctggtattctcgctaaaactggt
tacgaagactttggtggtggcggaggtggaatgtccggctcatcgtcgcaaaatgagttc
aacgactggctaaaacaatctaatttgccacgtggaacaactgaaggtggagatcatttg
agcaatgaagaattgaaaccaacggaaccggtagagacaaaaaagaaaaaggagagaagt
gtcaagccagtgcaaagcaaagaaaaagtaaccgcagaaaatgtagaggatgatgattct
tcttcaacaattactcaattcgagtcttcattcaacaaaccaaagacaacagctccacgt
ttggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCTGGTCTATGCTTTCAAAAG 137 49 655 Antisense
AGCTTCTCAAGCTGCAGCGATGGCA 288 79 681 Antisense
GACGTTGGAATTCAAGCTCAGCAGA 230 379 709 Antisense
GGTGGTGTCGCGAACAAAGCATCAG 618 499 781 Antisense
CCTGGGATGGATTATCTTCATTCGT 590 265 821 Antisense
CATTCGTAAAATCACCTTCTCTCAA 242 213 839 Antisense
GCGGAGGTGGAATGTCCGGCTCATC 515 287 914 Antisense
GGAGAGAAGTGTCAAGCCAGTGCAA 109 519 1065 Antisense
GAGGATGATGATTCTTCTTCAACAA 290 403 1120 Antisense
TCGAGTCTTCATTCAACAAACCAAA 445 603 1154 Antisense
AAAGACAACAGCTCCACGTTTGGCT 501 121 1176 Antisense
Sequence Source Affymetrix Proprietary Database