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[193975_at] Fibrinogen beta and gamma chains, C-terminal globular domain

Description Y43C5A.2 /REP_DB=WormBase Gene ID /WP=CE19151 /TR=Q9XXE9 /GB=CAA19505.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Fibrinogen beta and gamma chains, C-terminal globular domain
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 61      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 35      6grp_total > 70      4grp_total > 62      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3117
1 2 3 4 range
A 3622.8
(3)
P 		2516.6
(0.6)
P 		3141.9
(2)
P 		803.5
(-3)
P 		2819
B 3920.5
(3)
P 		2344.8
(-0.4)
P 		2628.5
(0.2)
P 		1117.7
(-3)
P 		2803
C 3311.7
(3)
P 		2227.5
(0.2)
P 		3193.5
(2.7)
P 		955.5
(-3)
P 		2356
avr 3618.3
(3) 		2363
(0.2) 		2988
(1.6) 		958.9
(-3) 		2659

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3364
1 2 3 4 5 6 range
A 3088.7
(-1.9)
P 		2722.6
(-3)
P 		4424.7
(2.1)
P 		4732.6
(3)
P 		3031.8
(-2.1)
P 		3508.9
(-0.7)
P 		2010
B 2984.7
(-2.4)
P 		3872.1
(2.7)
P 		3516.7
(0.7)
P 		3917.9
(3)
P 		3148.5
(-1.5)
P 		2885.8
(-3)
P 		1032
C 2585.3
(-3)
P 		3856
(-0.7)
P 		4207.8
(-0.1)
P 		5949.5
(3)
P 		2871.7
(-2.5)
P 		3287.3
(-1.7)
P 		3364
avr 2886.2
(-3) 		3483.6
(-1.2) 		4049.7
(0.5) 		4866.7
(3) 		3017.3
(-2.6) 		3227.3
(-2) 		1981
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1202
1 2 3 4 range
A 1319.1
(3)
P 		546.3
(-0.9)
P 		821.4
(0.5)
P 		117.6
(-3)
P 		1202
B 1250.2
(3)
P 		579.1
(-1)
P 		609.1
(-0.8)
P 		238.2
(-3)
P 		1012
C 1096.3
(2.9)
P 		640.4
(0)
P 		1113
(3)
P 		161.1
(-3)
P 		952
avr 1221.9
(3) 		588.6
(-0.6) 		847.8
(0.9) 		172.3
(-3) 		1050

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 720
1 2 3 4 5 6 range
A 569.4
(-3)
P 		968.3
(0.8)
P 		963.6
(0.7)
P 		1200.3
(3)
P 		914.9
(0.3)
P 		854.3
(-0.3)
P 		631
B 1038.5
(-0.5)
P 		1288.9
(3)
P 		854
(-3)
P 		1037.7
(-0.5)
P 		1279.2
(2.9)
P 		1076.1
(0.1)
P 		435
C 958.3
(-2.3)
P 		1176.6
(2.6)
P 		1071
(0.2)
P 		1196.4
(3)
P 		929.2
(-3)
P 		1100.4
(0.8)
P 		267
avr 855.4
(-3) 		1144.6
(3) 		962.9
(-0.8) 		1144.8
(3) 		1041.1
(0.9) 		1010.3
(0.2) 		289
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9895
Sequence Type Exemplar sequence
Representative Public ID Y43C5A.2 NCBI
Target Description Y43C5A.2 /REP_DB=WormBase Gene ID /WP=CE19151 /TR=Q9XXE9 /GB=CAA19505.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Fibrinogen beta and gamma chains, C-terminal globular domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069482 NCBI Caenorhabditis elegans Y43C5A.2 (Y43C5A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000044407 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10269871:10273321:1 9/11 None
Y43C5A.2 ENSEMBL cdna:known chromosome:CEL140:IV:10269854:10272662:1 gene:Y43C5A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044400 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10269876-10272608(+) 100.0 100.0
Public Domain and Genome References
Gene Title Fibrinogen beta and gamma chains, C-terminal globular domain
Ensembl Y43C5A.2
Entrez Gene 177911 Entrez gene
SwissProt Q9XXE9 EMBL-EBI
WormBase CE19151 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19505 Hypothetical protein Y43C5A.2 [Caenorhabditis elegans] ref|NP_501883.1| Y43C5A.2 [Caenorhabditis elegans] 0.0
blast CAE60731 Hypothetical protein CBG04412 [Caenorhabditis briggsae] 1.0E-136
blast CAE60731 Hypothetical protein CBG04412 [Caenorhabditis briggsae] 1.0E-109
blast AAB03126 Hypothetical protein C49C8.5 [Caenorhabditis elegans] ref|NP_501481.2| C49C8.5 [Caenorhabditis elegans] 1.0E-106
blast AAB03126 Hypothetical protein C49C8.5 [Caenorhabditis elegans] ref|NP_501481.2| C49C8.5 [Caenorhabditis elegans] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 4.1E-10
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 4.1E-10
Sequence
Target Sequence 
>C. ELEGANS:193975_AT
gctgtggaacactacttgttgccaaacaaatttatcacagtttcaaggttggaactgcag
aatatggctataatcttacagcaactgctgatatctcaggaattgggttggcttactctt
cgacttataccgatttgggagcaaaattttcaacattcgataattttaccgggcccctag
gaaaagatgattgtgacgagttccaatactttgatgacagcggtgttcaatcacaaccat
atggaggatggtggtacggaagttgcggaaataacttgaacggcttttggtatcctaaga
gaaatggaaactgcacagttcctgatgaagttttcaaaaacacaacaatgcttggaatta
acatgagaacgacatcaggacaaggttatggtggatataacgttgatatggtatcctatg
atcgtgttcgcatggctctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGGAACACTACTTGTTGCCAA 339 295 878 Antisense
GGCTATAATCTTACAGCAACTGCTG 2 539 943 Antisense
GAATTGGGTTGGCTTACTCTTCGAC 40 179 977 Antisense
GGCTTACTCTTCGACTTATACCGAT 579 535 987 Antisense
TCAACATTCGATAATTTTACCGGGC 50 629 1027 Antisense
TACCGGGCCCCTAGGAAAAGATGAT 555 647 1044 Antisense
GACGAGTTCCAATACTTTGATGACA 558 379 1072 Antisense
GACAGCGGTGTTCAATCACAACCAT 549 367 1093 Antisense
CTTGAACGGCTTTTGGTATCCTAAG 321 209 1152 Antisense
ATGGTATCCTATGATCGTGTTCGCA 443 51 1285 Antisense
TATGATCGTGTTCGCATGGCTCTAT 26 657 1294 Antisense
Sequence Source Affymetrix Proprietary Database