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[193974_s_at] Kunitz/Bovine pancreatic trypsin inhibitor domain (8 domains)

Description C34F6.1 /REP_DB=WormBase Gene ID /WP=CE15670 /TR=O17644 /GB=CAB03944.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain (8 domains)
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 49      6grp_highest_sub > De      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 856
1 2 3 4 range
A 34.9
(-3)
A 		890.5
(3)
P 		702.1
(1.7)
P 		125.3
(-2.4)
M 		856
B 92.6
(-2.9)
M 		811.4
(3)
P 		739.5
(2.4)
P 		81
(-3)
A 		730
C 92
(-3)
M 		850.2
(3)
P 		665.6
(1.5)
P 		126.6
(-2.7)
P 		758
avr 73.2
(-3) 		850.7
(3) 		702.4
(1.9) 		111
(-2.7) 		778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 461.9
(0.9)
P 		634.8
(3)
P 		323.1
(-0.8)
P 		496.9
(1.3)
P 		428.4
(0.5)
P 		147.1
(-3)
P 		488
B 425.4
(0.4)
P 		646
(3)
P 		388.9
(-0.1)
P 		503.1
(1.3)
P 		315.8
(-0.9)
P 		142.7
(-3)
P 		503
C 510.1
(1.3)
P 		648.1
(3)
P 		429.2
(0.3)
P 		530.9
(1.6)
P 		548.3
(1.8)
P 		157.2
(-3)
P 		491
avr 465.8
(0.8) 		643
(3) 		380.4
(-0.2) 		510.3
(1.4) 		430.8
(0.4) 		149
(-3) 		494
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 12.7
(-3)
A 		193.3
(3)
P 		183.6
(2.7)
P 		18.3
(-2.8)
M 		181
B 29.5
(-2.6)
M 		200.4
(3)
P 		171.4
(2)
P 		17.3
(-3)
A 		183
C 30.5
(-2.8)
M 		244.4
(3)
P 		232
(2.7)
P 		21.3
(-3)
P 		223
avr 24.2
(-2.8) 		212.7
(3) 		195.7
(2.5) 		19
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 85.1
(-1.4)
P 		225.8
(3)
P 		70.4
(-1.9)
P 		126
(-0.2)
P 		129.3
(-0)
P 		35.8
(-3)
P 		190
B 148
(0.5)
P 		215
(3)
P 		94.4
(-1.5)
P 		133.3
(-0)
P 		128.3
(-0.2)
P 		53.2
(-3)
P 		162
C 189.1
(2.6)
P 		197.8
(3)
P 		109.2
(-0.7)
P 		106.8
(-0.8)
P 		177.4
(2.2)
P 		52.6
(-3)
P 		145
avr 140.7
(0.4) 		212.9
(3) 		91.3
(-1.4) 		122
(-0.3) 		145
(0.5) 		47.2
(-3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193974_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16609
Sequence Type Exemplar sequence
Representative Public ID C34F6.1 NCBI
Target Description C34F6.1 /REP_DB=WormBase Gene ID /WP=CE15670 /TR=O17644 /GB=CAB03944.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Kunitz-Bovine pancreatic trypsin inhibitor domain (8 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077467 NCBI Caenorhabditis elegans C34F6.1 (C34F6.1) mRNA, complete cds. 11/11 None
SNAP00000004399 ENSEMBL cdna:SNAP chromosome:CEL140:X:11192755:11196757:-1 11/11 None
GENEFINDER00000004415 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11192755:11196757:-1 11/11 None
C34F6.1 ENSEMBL cdna:known chromosome:CEL140:X:11192435:11196764:-1 gene:C34F6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11192754-11196757(-) 100.0 100.0
Public Domain and Genome References
Gene Title Kunitz/Bovine pancreatic trypsin inhibitor domain (8 domains)
Ensembl C34F6.1
Entrez Gene 181306 Entrez gene
SwissProt O17644 EMBL-EBI
WormBase CE15670 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03944 Hypothetical protein C34F6.1 [Caenorhabditis elegans] ref|NP_509868.1| C34F6.1 [Caenorhabditis elegans] 0.0
blast CAE70687 Hypothetical protein CBG17404 [Caenorhabditis briggsae] 0.0
blast CAE61720 Hypothetical protein CBG05670 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.9E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-21
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 6.9E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.7E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.8E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-22
Sequence
Target Sequence 
>C. ELEGANS:193974_S_AT
aacagctgcccacaaaattcgtactgtcacgttggatctagtgctctcactacgctgtgc
tgccctaagagaaaaatcgacccgtgtgatcaagccgtagaggaaggaacaggatcagaa
gacttgccaagatggttcttcgatcgcaaacaaaacagatgtgctccatttacatacgga
ggagttgctggaaacgaaaacaacttcattagtcaaaatacttgtatggaagcatgtcca
gaatacagaaattattgtccgcatggaattccattgattgagggatcaacagtaacctcg
tgcggtattgacaagggatgtccggaaggatttatttgccacatgtcttctgagttcaat
gtttccatttgttgccaggacccaatggatttctgcctctcagctcgcgactcgggacca
tgcaataactttgagaagcgatatggttatgatgcgaacacagatacttgtgttgaatat
caatatggagggtgtgaaggaacattgaacaacttccattctctgcaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCTGCCCACAAAATTCGTACT 4 135 2566 Antisense
GTCACGTTGGATCTAGTGCTCTCAC 298 465 2591 Antisense
TCGACCCGTGTGATCAAGCCGTAGA 287 601 2642 Antisense
GACTTGCCAAGATGGTTCTTCGATC 474 371 2686 Antisense
ACAGATGTGCTCCATTTACATACGG 359 107 2720 Antisense
GGATCAACAGTAACCTCGTGCGGTA 162 511 2848 Antisense
ATTTGCCACATGTCTTCTGAGTTCA 525 17 2899 Antisense
TGTTTCCATTTGTTGCCAGGACCCA 274 561 2925 Antisense
CAGGACCCAATGGATTTCTGCCTCT 407 209 2941 Antisense
TCGCGACTCGGGACCATGCAATAAC 78 601 2970 Antisense
GAACAACTTCCATTCTCTGCAAAGA 254 353 3072 Antisense
Sequence Source Affymetrix Proprietary Database