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[193969_s_at]

Description F36F2.3 /REP_DB=WormBase Gene ID /WP=CE15977 /TR=O62235 /GB=CAB04326.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger), Zinc finger, CCHC class
Cluster 6grp_total > 37      4grp_total > 38      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 175.3
(3)
P 		114.3
(-1.9)
A 		100.4
(-3)
A 		105.7
(-2.6)
A 		75
B 255.7
(3)
P 		124
(-3)
A 		136.4
(-2.4)
A 		127.4
(-2.8)
A 		132
C 229.2
(3)
P 		179.8
(0.5)
P 		111.4
(-3)
A 		181.4
(0.6)
P 		118
avr 220.1
(3) 		139.4
(-1.7) 		116.1
(-3) 		138.2
(-1.7) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 184.9
(1.7)
P 		208.3
(3)
P 		177.7
(1.4)
P 		117.4
(-1.9)
A 		96.5
(-3)
A 		147.3
(-0.3)
A 		112
B 228.5
(3)
P 		157.7
(-0.1)
P 		117.9
(-1.8)
P 		148.7
(-0.5)
A 		89.9
(-3)
A 		195.7
(1.6)
P 		139
C 246.5
(3)
P 		136.3
(-1.1)
P 		167.9
(0)
M 		139
(-1)
A 		87.1
(-3)
A 		195.1
(1.1)
P 		159
avr 220
(3) 		167.4
(0.5) 		154.5
(-0.1) 		135
(-1) 		91.2
(-3) 		179.4
(1.1) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 63.8
(3)
P 		24.8
(-1.8)
A 		26.2
(-1.7)
A 		15.5
(-3)
A 		48
B 81.5
(3)
P 		30.6
(-2.6)
A 		31.6
(-2.5)
A 		27.1
(-3)
A 		54
C 75.9
(3)
P 		51.7
(-0.2)
P 		38.8
(-1.9)
A 		30.6
(-3)
P 		45
avr 73.7
(3) 		35.7
(-1.6) 		32.2
(-2.1) 		24.4
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 34.1
(-2.3)
P 		74.1
(3)
P 		38.7
(-1.7)
P 		29.8
(-2.9)
A 		29.1
(-3)
A 		35.9
(-2.1)
A 		45
B 79.5
(3)
P 		52.5
(-0.2)
P 		28.6
(-3)
P 		39.4
(-1.7)
A 		36.5
(-2.1)
A 		73
(2.2)
P 		51
C 91.4
(3)
P 		41.6
(-1.7)
P 		42.7
(-1.6)
M 		28
(-3)
A 		28.2
(-3)
A 		65.3
(0.5)
P 		63
avr 68.3
(3) 		56.1
(1) 		36.7
(-2.1) 		32.4
(-2.8) 		31.3
(-3) 		58.1
(1.3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193969_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1177
Sequence Type Exemplar sequence
Representative Public ID F36F2.3 NCBI
Target Description F36F2.3 /REP_DB=WormBase Gene ID /WP=CE15977 /TR=O62235 /GB=CAB04326.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger), Zinc finger, CCHC class
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060022(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060022 NCBI Caenorhabditis elegans F36F2.6 (F36F2.6) mRNA, complete cds. 10/11 None
SNAP00000021375 ENSEMBL cdna:SNAP chromosome:CEL140:I:9013126:9016832:-1 11/11 None
GENEFINDER00000021384 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9013126:9016832:-1 11/11 None
F36F2.6 ENSEMBL cdna:known chromosome:CEL140:I:9013126:9016832:-1 gene:F36F2.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9013056-9021913(-) 93.1 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fcp-1
Ensembl F36F2.6
Entrez Gene 172719 Entrez gene
SwissProt Q95QG8 EMBL-EBI
WormBase CE28931 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC70088 Hypothetical protein F36F2.6 [Caenorhabditis elegans] ref|NP_492423.1| F36F2.6 [Caenorhabditis elegans] 0.0
blast CAE67015 Hypothetical protein CBG12416 [Caenorhabditis briggsae] 0.0
blast XP_623605 PREDICTED: similar to CG12252-PA [Apis mellifera] 4.0E-71
blast XP_623605 PREDICTED: similar to CG12252-PA [Apis mellifera] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR004274 EMBL-EBI NLI interacting factor 9.3E-5
Pfam IPR004274 EMBL-EBI NLI interacting factor 6.3E-28
Pfam IPR001357 EMBL-EBI BRCT 1.2E-13
Pfam IPR004274 EMBL-EBI NLI interacting factor 1.3E-34
Pfam IPR001357 EMBL-EBI BRCT 1.2E-13
Pfam IPR004274 EMBL-EBI NLI interacting factor 6.3E-28
Pfam IPR001357 EMBL-EBI BRCT 1.2E-13
Sequence
Target Sequence 
>C. ELEGANS:193969_S_AT
gttggacgtccacttggatcaaagtatgtcaatgatttggcaaatatggacacaattggg
aaagccgcgttagctgatatgaataatgaagtagatgaagctctatcggatgatgaagac
gatggagacaatgaggatgaggatgatgatgggaatgatgttggagaagataagggagat
gaaaatttagaagagaaacaagagaaaaatgaagaagaaatggatgatgttgagcagaat
ggatctgttgagaatcaatcaggagatgctttggaaaacgagacagattctacatcaagg
ggacagaaaagaaagcattgtcctgaaatggaggacgaggaagaggaatcagattctgat
aatgaggatgacgatacccctatgtcgtacaaagcacttttgtcagattcacgcaaaaaa
ggtcgaattgttccagaaaacgaggatgatgcagtatttgatgttgatgatgagaaaggc
cacgcaccagctaatatagatgaagaagaagatgacgaagacaatgaagatgaggaagta
ccggaatctgatgatgacgatgagttcgaggatatggctgcattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGACGTCCACTTGGATCAAAGT 497 433 5017 Antisense
GGGAAAGCCGCGTTAGCTGATATGA 290 495 5074 Antisense
GATGAAGCTCTATCGGATGATGAAG 606 411 5110 Antisense
GAGACAGATTCTACATCAAGGGGAC 5 393 5296 Antisense
ATGAGGATGACGATACCCCTATGTC 75 45 5378 Antisense
GATACCCCTATGTCGTACAAAGCAC 233 423 5389 Antisense
AAAGCACTTTTGTCAGATTCACGCA 195 123 5407 Antisense
TGATGAGAAAGGCCACGCACCAGCT 563 565 5484 Antisense
GGCCACGCACCAGCTAATATAGATG 569 541 5494 Antisense
GAGGAAGTACCGGAATCTGATGATG 485 405 5548 Antisense
TGAGTTCGAGGATATGGCTGCATTG 439 567 5577 Antisense
Sequence Source Affymetrix Proprietary Database