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[193968_at]

Description Y59A8B.8_rc /REP_DB=WormBase Gene ID /WP=CE24502 /TR=Q9NEQ8 /GB=CAB60957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=gamma-soluble NSF attachment protein (SNAP-gamma)
Cluster 6grp_total > 50      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.6
(-2.7)
A 		15.6
(3)
A 		7.3
(-2.9)
A 		7.2
(-3)
A 		8
B 15.4
(3)
A 		14.1
(2)
A 		9.1
(-2)
A 		7.8
(-3)
A 		8
C 7.4
(-3)
A 		8.1
(-2.3)
A 		9.9
(-0.4)
A 		13.2
(3)
A 		6
avr 10.1
(-0.9) 		12.6
(3) 		8.8
(-3) 		9.4
(-2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.3
(3)
A 		10.6
(-0.8)
A 		14.9
(0.8)
A 		4.2
(-3)
A 		10.6
(-0.8)
A 		4.8
(-2.8)
A 		17
B 9.4
(-2)
A 		10.9
(-1.7)
A 		4.4
(-3)
A 		35.2
(3)
A 		9.6
(-2)
A 		5
(-2.9)
A 		31
C 13.4
(2.4)
A 		14
(2.8)
A 		14.3
(3)
A 		12.8
(2.1)
A 		4.8
(-3)
A 		6.2
(-2.1)
A 		10
avr 14.7
(1.7) 		11.8
(0.2) 		11.2
(-0.1) 		17.4
(3) 		8.3
(-1.5) 		5.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.8
(1.5)
A 		3.4
(3)
A 		1.9
(-0.8)
A 		1
(-3)
A 		2
B 4.9
(3)
A 		3.5
(0.4)
A 		2.1
(-2.3)
A 		1.7
(-3)
A 		3
C 2.4
(-2)
A 		2.3
(-2.5)
A 		3.4
(3)
A 		2.2
(-3)
A 		1
avr 3.4
(3) 		3.1
(2) 		2.5
(0) 		1.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.9
(3)
A 		3.8
(2.8)
A 		3.3
(1.7)
A 		1.1
(-3)
A 		3.2
(1.5)
A 		1.2
(-2.8)
A 		3
B 3.3
(-1.4)
A 		3.6
(-1.2)
A 		1.1
(-3)
A 		9.3
(3)
A 		3.9
(-1)
A 		1.9
(-2.4)
A 		8
C 5
(3)
A 		4.3
(1.8)
A 		3.6
(0.5)
A 		2.6
(-1.2)
A 		1.6
(-3)
A 		2.1
(-2.1)
A 		3
avr 4.1
(2.5) 		3.9
(2.1) 		2.7
(-0.7) 		4.3
(3) 		2.9
(-0.2) 		1.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28154
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.8 NCBI
Target Description Y59A8B.8_rc /REP_DB=WormBase Gene ID /WP=CE24502 /TR=Q9NEQ8 /GB=CAB60957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=gamma-soluble NSF attachment protein (SNAP-gamma)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y59A8B.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y59A8B.8 Y59A8B.8_rc /REP_DB=WormBase Gene ID /WP=CE24502 /TR=Q9NEQ8 /GB=CAB60957.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=gamma-soluble NSF attachment protein (SNAP-gamma) A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075126 11/11 Negative Strand Matching Probes A 
SNAP00000028702 11/11 Negative Strand Matching Probes None
GENEFINDER00000028717 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18064736-18068879(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y59A8B.8
Sequence
Target Sequence 
>C. ELEGANS:193968_AT
taatctttgagagccgccactgaatcttccagagccaaattcactataacaagaccgatt
ccgagttggccaatacgtggatattccatttttgcacgatccgattgttggaccaaagcc
aatccacgttggtaaatctgaagtgcttccttaggattatcatttttcagaacatctgca
gctttttcgacagtcatcgccgccgtatcgagacttccactctccgcataaccattaatt
gctttttcgaataaaacgacggcttctgaaaattctttgatgtcacgaagcaacattgcg
gctccttcgcgggcttttgcagcgtggaataaatttcgattctgttcataatattcggcg
gctttcagtagagaaccggctgcttttttcgggtcctgagcgtttctataacaaacagaa
gccctctccatcgccgaagcggctccatcaaaatcaggcttaaatttgagcttaatcatt
gaagtcttcatacaatcttcagcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTTTGAGAGCCGCCACTGAAT 462 633 329 Antisense
CGCCACTGAATCTTCCAGAGCCAAA 99 257 343 Antisense
ACAAGACCGATTCCGAGTTGGCCAA 489 111 377 Antisense
TGCAGCTTTTTCGACAGTCATCGCC 198 579 505 Antisense
CGAAGCAACATTGCGGCTCCTTCGC 2 253 614 Antisense
TTCGCGGGCTTTTGCAGCGTGGAAT 395 697 634 Antisense
AGTAGAGAACCGGCTGCTTTTTTCG 557 61 695 Antisense
TTTCGGGTCCTGAGCGTTTCTATAA 116 547 715 Antisense
ATAACAAACAGAAGCCCTCTCCATC 428 25 736 Antisense
GAAGCGGCTCCATCAAAATCAGGCT 499 343 764 Antisense
AGTCTTCATACAATCTTCAGCTTTA 572 61 811 Antisense
Sequence Source Affymetrix Proprietary Database