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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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193958_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.11341
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Exemplar sequence
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F44C4.3 NCBI
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F44C4.3 /REP_DB=WormBase Gene ID /WP=CE07251 /GEN=cpr-4 /TR=SW:P43508 /GB=AAA92327.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cathepsin B-like cysteine proteinase 4 precursor
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_072281(11) |
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NM_072281 NCBI |
Caenorhabditis elegans Cysteine PRotease related family member (cpr-4) (cpr-4) mRNA, complete cds. |
11/11 |
None |
SNAP00000007885 ENSEMBL |
cdna:SNAP chromosome:CEL140:V:6617194:6618362:1 |
11/11 |
None |
GENEFINDER00000007893 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:V:6617194:6618362:1 |
11/11 |
None |
F44C4.3.1 ENSEMBL |
cdna:known chromosome:CEL140:V:6617268:6618677:1 gene:F44C4.3 |
11/11 |
None |
F44C4.3.2 ENSEMBL |
cdna:known chromosome:CEL140:V:6617268:6618438:1 gene:F44C4.3 |
11/11 |
None | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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|
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chrV:6617354-6618362(+) |
99.9 |
99.9 |
| |
Public Domain and Genome References |
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cathepsin B-like cysteine proteinase 4 precursor
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cpr-4
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F44C4.3
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179053 Entrez gene
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P43508 EMBL-EBI
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CE07251 Wormbase
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Functional Annotations |
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6508 |
proteolysis |
inferred from electronic annotation |
QuickGO AmiGO |
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|
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4197 |
cysteine-type endopeptidase activity |
inferred from electronic annotation |
QuickGO AmiGO |
8234 |
cysteine-type peptidase activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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|
|
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|
blast |
AAA92327 |
Cysteine protease related protein 4 [Caenorhabditis elegans] ref|NP_504682.1| Cysteine PRotease related family member (cpr-4) [Caenorhabditis elegans] sp|P43508|CPR4_CAEEL Cathepsin B-like cysteine proteinase 4 precursor (Cysteine protease-related 4) gb|AAA98783.1| cathepsin B-like cysteine proteinase gb|AAA98785.1| cathepsin B-like cysteine proteinase [Caenorhabditis elegans] |
0.0 |
blast |
CAE71916 |
Hypothetical protein CBG18978 [Caenorhabditis briggsae] |
1.0E-180 | |
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|
|
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Pfam |
IPR000668 EMBL-EBI |
Peptidase C1A, papain |
1.8E-115 |
Pfam |
IPR000668 EMBL-EBI |
Peptidase C1A, papain |
1.8E-115 |
SNAP00000007885 |
1 |
24-43 |
GENEFINDER00000007893 |
1 |
24-43 | |
Sequence |
|
>C. ELEGANS:193958_AT
aacacccttctctcagctgaagatgttctttcttgctgctccaactgcggatacggatgc
gagggaggatacccaatcaacgcctggaagtaccttgtcaagagcggattctgcaccgga
ggatcttacgaggctcagttcggatgcaagccatactcccttgccccatgcggagagacc
gtcggaaacgttacctggccatcttgcccagatgatggatacgataccccagcttgtgtt
aacaagtgcaccaacaagaactacaacgttgcctacaccgctgacaagcacttcggaagc
accgcttacgccgtcggaaagaaggtctcccagatccaagctgaaatcattgcccacgga
ccagtcgaggccgcattcactgtctacgaggacttctaccaatacaagaccggagtctac
gttcacaccactggacaagaactcggaggacatgccatcaga
BLASTn GenBank NR |
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AACACCCTTCTCTCAGCTGAAGATG |
704 |
135 |
403 |
Antisense |
CTGCTCCAACTGCGGATACGGATGC |
503 |
237 |
438 |
Antisense |
GGATACCCAATCAACGCCTGGAAGT |
627 |
505 |
469 |
Antisense |
GATTCTGCACCGGAGGATCTTACGA |
161 |
433 |
509 |
Antisense |
GGATCTTACGAGGCTCAGTTCGGAT |
325 |
509 |
523 |
Antisense |
TACGATACCCCAGCTTGTGTTAACA |
93 |
645 |
622 |
Antisense |
CAAGAACTACAACGTTGCCTACACC |
329 |
183 |
657 |
Antisense |
GACAAGCACTTCGGAAGCACCGCTT |
326 |
365 |
685 |
Antisense |
AGGTCTCCCAGATCCAAGCTGAAAT |
36 |
59 |
725 |
Antisense |
CAAGACCGGAGTCTACGTTCACACC |
39 |
183 |
807 |
Antisense |
AGAACTCGGAGGACATGCCATCAGA |
44 |
73 |
840 |
Antisense | |
|
Affymetrix Proprietary Database |