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[193956_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)

Description Y57G11C.25 /REP_DB=WormBase Gene ID /WP=CE14978 /TR=O18251 /GB=CAB16528.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster 6grp_total > 64      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 14.7
(-3)
A 		90.1
(2.1)
A 		79
(1.4)
A 		102.6
(3)
A 		88
B 111.7
(1.6)
A 		86.9
(0.3)
A 		138.1
(3)
A 		22.9
(-3)
A 		115
C 62.1
(-1)
A 		70.6
(0.3)
A 		48
(-3)
A 		89.7
(3)
A 		42
avr 62.8
(-3) 		82.5
(1.6) 		88.4
(3) 		71.7
(-0.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 59
(-2.4)
A 		50.4
(-3)
A 		105.5
(0.8)
P 		75.1
(-1.3)
A 		101.3
(0.5)
A 		137.2
(3)
P 		87
B 68.2
(-1.7)
A 		79.6
(0.2)
A 		95.5
(3)
A 		86.3
(1.4)
M 		60.9
(-3)
A 		77
(-0.2)
P 		35
C 68
(-2.3)
A 		96.4
(3)
A 		89.2
(1.7)
A 		71.2
(-1.7)
A 		95.4
(2.8)
A 		64.2
(-3)
P 		32
avr 65.1
(-3) 		75.5
(-1) 		96.7
(3) 		77.5
(-0.6) 		85.9
(0.9) 		92.8
(2.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.3
(-3)
A 		19.6
(2.6)
A 		20.7
(3)
A 		15
(0.8)
A 		15
B 35.6
(3)
A 		21.5
(0.2)
A 		32
(2.3)
A 		4.9
(-3)
A 		31
C 20.6
(3)
A 		20.3
(2.7)
A 		16.7
(-1.3)
A 		15.1
(-3)
A 		6
avr 20.5
(1.6) 		20.5
(1.6) 		23.1
(3) 		11.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.9
(-3)
A 		17.9
(-1.1)
A 		23
(0.2)
P 		19
(-0.8)
A 		30.6
(2.3)
A 		33.4
(3)
P 		23
B 23.7
(-2.2)
A 		26.5
(0.7)
A 		23.2
(-2.7)
A 		22.9
(-3)
M 		24.7
(-1.1)
A 		28.7
(3)
P 		6
C 25.2
(0.9)
A 		29.4
(2.5)
A 		22.7
(0)
A 		14.3
(-3)
A 		30.9
(3)
A 		21.5
(-0.4)
P 		17
avr 19.9
(-2.3) 		24.6
(0.5) 		23
(-0.4) 		18.7
(-3) 		28.7
(3) 		27.9
(2.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9881
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.25 NCBI
Target Description Y57G11C.25 /REP_DB=WormBase Gene ID /WP=CE14978 /TR=O18251 /GB=CAB16528.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070404 NCBI Caenorhabditis elegans Y57G11C.25 (Y57G11C.25) mRNA, complete cds. 11/11 None
SNAP00000003506 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14919586:14920238:1 11/11 None
GENEFINDER00000003610 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14919586:14920238:1 11/11 None
Y57G11C.25 ENSEMBL cdna:known chromosome:CEL140:IV:14919586:14920383:1 gene:Y57G11C.25 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14919591-14920244(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Ensembl Y57G11C.25
Entrez Gene 178412 Entrez gene
SwissProt O18251 EMBL-EBI
WormBase CE14978 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16528 Hypothetical protein Y57G11C.25 [Caenorhabditis elegans] ref|NP_502805.1| Y57G11C.25 [Caenorhabditis elegans] 6.0E-97
blast CAB05191 Hypothetical protein F38C2.5 [Caenorhabditis elegans] ref|NP_502931.1| F38C2.5 [Caenorhabditis elegans] 2.0E-63
blast AAB37036 Posterior segregation protein 1 [Caenorhabditis elegans] ref|NP_505172.1| POsterior Segregation family member (pos-1) [Caenorhabditis elegans] dbj|BAA33854.1| cytoplasmic zinc-finger protein [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.4E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.0E-13
Sequence
Target Sequence 
>C. ELEGANS:193956_AT
ccgatgtcccaactgctgcatggacctctcaacagccacgttctccaagaatgtttgacc
aggaaaatggcttctcacagaacttccagccattcatgcagcagaataagacggtgaatc
catgcacaatttccgacgatgttcgcgaagaaatgatgagattgagaagaagagaaaatg
cattcaaaactgctctttgcaagacgttccagctcacaaaagcatgctcatacggggagc
aatgcaaatttgctcacagtgtcgaagagcttcagctgaaacatcagaaccttggaatca
ataacccaaaatataaaactgttctttgtgacaatttctctacaactggacactgcaaat
atggcacaaaatgtcagtttattcacagaactgtggagccagcttctctgaaaattcaaa
atccactggtaccccgattcccctcgtggtttgctcctccatcgagccttgctcgggaat
tcctttgtctcaaccattttgaagcatctacttccagctctaccacccaaaaattgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGATGTCCCAACTGCTGCATGGAC 117 265 35 Antisense
TGCTGCATGGACCTCTCAACAGCCA 312 581 48 Antisense
CAACAGCCACGTTCTCCAAGAATGT 201 189 64 Antisense
ATGGCTTCTCACAGAACTTCCAGCC 108 53 101 Antisense
GCACAATTTCCGACGATGTTCGCGA 450 317 158 Antisense
GCAAGACGTTCCAGCTCACAAAAGC 469 319 233 Antisense
ACAGAACTGTGGAGCCAGCTTCTCT 502 107 419 Antisense
ATTCAAAATCCACTGGTACCCCGAT 171 11 448 Antisense
TGCTCGGGAATTCCTTTGTCTCAAC 32 581 504 Antisense
TTGAAGCATCTACTTCCAGCTCTAC 669 703 533 Antisense
CAGCTCTACCACCCAAAAATTGACT 655 203 549 Antisense
Sequence Source Affymetrix Proprietary Database