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[193947_s_at] similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1

Description C39D10.7 /REP_DB=WormBase Gene ID /WP=CE04186 /TR=Q18529 /GB=AAK39209.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 83.4
(-3)
A 		119.6
(-1.4)
A 		98.6
(-2.3)
P 		216.1
(3)
P 		133
B 101.9
(-2.9)
P 		168.1
(1.5)
M 		99.9
(-3)
P 		190.3
(3)
P 		90
C 109.5
(-1.1)
P 		174.1
(3)
A 		80.6
(-3)
A 		132.3
(0.3)
P 		94
avr 98.3
(-2.6) 		153.9
(1.2) 		93
(-3) 		179.6
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1349
1 2 3 4 5 6 range
A 166.8
(-2.5)
A 		112.2
(-2.8)
P 		83.7
(-3)
P 		131.6
(-2.7)
P 		1117.7
(3)
P 		896.6
(1.7)
P 		1034
B 122.1
(-2.7)
P 		107.3
(-2.8)
P 		81.7
(-3)
A 		135.9
(-2.6)
P 		812.5
(3)
P 		718.7
(2.2)
P 		731
C 112.1
(-3)
P 		104.4
(-3)
P 		138.5
(-2.8)
A 		176.1
(-2.7)
P 		1430.3
(3)
P 		763
(-0)
P 		1326
avr 133.7
(-2.8) 		108
(-3) 		101.3
(-3) 		147.9
(-2.7) 		1120.2
(3) 		792.8
(1.1) 		1019
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30.4
(1.8)
A 		26
(-2.8)
A 		25.8
(-3)
P 		31.6
(3)
P 		6
B 32.5
(0.1)
P 		41.5
(3)
M 		23.1
(-3)
P 		40.6
(2.7)
P 		18
C 36.2
(0)
P 		50
(3)
A 		28.1
(-1.7)
A 		22.3
(-3)
P 		28
avr 33
(0.2) 		39.2
(3) 		25.7
(-3) 		31.5
(-0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 30.7
(-2.8)
A 		39.9
(-2.6)
P 		18.2
(-3)
P 		33.4
(-2.7)
P 		337.3
(3)
P 		218.3
(0.8)
P 		319
B 42.5
(-2.6)
P 		35.7
(-2.7)
P 		19.9
(-3)
A 		36
(-2.7)
P 		330.1
(3)
P 		268
(1.8)
P 		310
C 41.5
(-2.9)
P 		31.9
(-3)
P 		35.3
(-3)
A 		35.4
(-3)
P 		462.8
(3)
P 		255.4
(0.1)
P 		431
avr 38.2
(-2.8) 		35.8
(-2.8) 		24.5
(-3) 		34.9
(-2.8) 		376.7
(3) 		247.2
(0.8) 		352
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16446
Sequence Type Exemplar sequence
Representative Public ID C39D10.7 NCBI
Target Description C39D10.7 /REP_DB=WormBase Gene ID /WP=CE04186 /TR=Q18529 /GB=AAK39209.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076933 NCBI Caenorhabditis elegans C39D10.7 (C39D10.7) mRNA, complete cds. 11/11 None
SNAP00000015640 ENSEMBL cdna:SNAP chromosome:CEL140:X:7907964:7913872:-1 11/11 None
GENEFINDER00000015642 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7907964:7913872:-1 11/11 None
C39D10.7 ENSEMBL cdna:known chromosome:CEL140:X:7907897:7914066:-1 gene:C39D10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7907962-7913780(-) 99.97 99.97
Public Domain and Genome References
Gene Title similar to C. elegans proteins B0280.5, R02F2.4 and C07G2.1
Ensembl C39D10.7
Entrez Gene 181050 Entrez gene
SwissProt Q18529 EMBL-EBI
WormBase CE29712 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39209 Hypothetical protein C39D10.7 [Caenorhabditis elegans] ref|NP_509334.2| C39D10.7 [Caenorhabditis elegans] 0.0
blast T15787 hypothetical protein C39D10.7 - Caenorhabditis elegans 0.0
blast CAE70320 Hypothetical protein CBG16847 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.8E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 5.4E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.8E-13
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.4E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.4E-17
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.2E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.5E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.1E-17
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.1E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.9E-17
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.8E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 5.4E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.8E-13
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.4E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.4E-17
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.2E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.5E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.1E-17
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.1E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.9E-17
Sequence
Target Sequence 
>C. ELEGANS:193947_S_AT
agctgcccgaacagtctcaaattctccaaggaatccgaaaagtgtgtattcccaattgac
gcaaaggaatgctcaattgcaaccactctagacagaacacctccagcagtgccaagtgat
ttctgcacgatcagatctaacggactccaccacctcaaaatgtgctccccacattacatt
gtctgtgacaacggaagagccttttctggaacttgtattgctccattggtgtacaatggg
gacacgcaaacttgtaattataagagcaccaataaggactgtggcaatgattacatacct
ccagttgctgaagtcacatctagttacacaacttacaccaccaaaagatttgagcagcca
gctccaaccacgactgcagccccgtatcaacctcaaacaacgactactggaaaggttctc
tacaaagctgcatataccaccaccgctacacagtatgaagaaccagcaacaactccctct
cgcgatgtagagactccaaccaccactactcacaaaccgtacgagacaaccactgaagca
caagatgcaaccacaactactacagcttcatatgtggcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCCCGAACAGTCTCAAATTCT 686 79 2797 Antisense
TGCTCAATTGCAACCACTCTAGACA 91 579 2866 Antisense
CACGATCAGATCTAACGGACTCCAC 247 197 2922 Antisense
TGCTCCCCACATTACATTGTCTGTG 611 581 2959 Antisense
GAACTTGTATTGCTCCATTGGTGTA 168 351 3005 Antisense
GATTACATACCTCCAGTTGCTGAAG 585 429 3085 Antisense
AGATTTGAGCAGCCAGCTCCAACCA 691 65 3142 Antisense
CCACCACCGCTACACAGTATGAAGA 676 273 3233 Antisense
GCGATGTAGAGACTCCAACCACCAC 206 291 3278 Antisense
AACCGTACGAGACAACCACTGAAGC 695 87 3311 Antisense
TACTACAGCTTCATATGTGGCCCCA 503 645 3354 Antisense
Sequence Source Affymetrix Proprietary Database