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[193945_at] PhoX homologous domain, present in p47phox and p40phox.

Description F17H10.3 /REP_DB=WormBase Gene ID /WP=CE03228 /TR=SW:Q19532 /GB=CAA93650.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=PhoX homologous domain, present in p47phox and p40phox.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 52      6grp_total > 71      4grp_total > 23      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 715.2
(3)
P 		606.8
(-0.6)
P 		536.2
(-3)
P 		656.8
(1)
P 		179
B 754.3
(2.1)
P 		515.4
(-3)
P 		521.5
(-2.9)
P 		797
(3)
P 		282
C 791.5
(3)
P 		465
(-3)
P 		602.9
(-0.5)
P 		664.3
(0.7)
P 		327
avr 753.7
(3) 		529.1
(-3) 		553.5
(-2.3) 		706
(1.7) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 665.2
(0.3)
P 		695.3
(0.8)
P 		583.1
(-0.9)
P 		839.2
(3)
P 		697.4
(0.8)
P 		448
(-3)
P 		391
B 623.5
(-1.2)
P 		684.6
(0.1)
P 		706.9
(0.5)
P 		824.3
(3)
P 		670.8
(-0.2)
P 		539.2
(-3)
P 		285
C 639
(-1.1)
P 		633.2
(-1.3)
P 		732.2
(1.1)
P 		808.9
(3)
P 		612.5
(-1.8)
P 		561.5
(-3)
P 		247
avr 642.6
(-0.5) 		671
(0) 		674.1
(0.1) 		824.1
(3) 		660.2
(-0.2) 		516.2
(-3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 260.4
(3)
P 		131.7
(-1.7)
P 		140.2
(-1.4)
P 		96.1
(-3)
P 		164
B 240.6
(3)
P 		127.3
(-2.7)
P 		120.8
(-3)
P 		169.8
(-0.5)
P 		120
C 262
(3)
P 		133.7
(-2.1)
P 		210.1
(0.9)
P 		112
(-3)
P 		150
avr 254.3
(3) 		130.9
(-2.8) 		157
(-1.6) 		126
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 122.6
(-2.4)
P 		247.3
(3)
P 		127
(-2.2)
P 		212.8
(1.5)
P 		210.4
(1.4)
P 		109.1
(-3)
P 		138
B 217
(-0.3)
P 		227.9
(0.3)
P 		171.7
(-3)
P 		218.3
(-0.2)
P 		272.5
(3)
P 		201.1
(-1.3)
P 		101
C 236.8
(3)
P 		193.2
(-0.5)
P 		186.3
(-1.1)
P 		162.7
(-3)
P 		198.2
(-0.1)
P 		188
(-1)
P 		74
avr 192.1
(-0.2) 		222.8
(2.6) 		161.7
(-3) 		197.9
(0.3) 		227
(3) 		166.1
(-2.6) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18056
Sequence Type Exemplar sequence
Representative Public ID F17H10.3 NCBI
Target Description F17H10.3 /REP_DB=WormBase Gene ID /WP=CE03228 /TR=SW:Q19532 /GB=CAA93650.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=PhoX homologous domain, present in p47phox and p40phox.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077778 NCBI Caenorhabditis elegans F17H10.3 (F17H10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001676 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13116452:13122200:-1 11/11 None
F17H10.3 ENSEMBL cdna:known chromosome:CEL140:X:13116286:13122210:-1 gene:F17H10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001674 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13116549-13119069(-) 100.0 100.0
Public Domain and Genome References
Gene Title PhoX homologous domain, present in p47phox and p40phox.
Ensembl F17H10.3
Entrez Gene 184624 Entrez gene
SwissProt Q19532 EMBL-EBI
WormBase CE31483 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8291.1.S1_S_AT similar to Sorting nexin-17 cfa
DROSOPHILA_2:1623989_AT dm
DROSGENOME1:142597_AT dm
CHICKEN:GGAAFFX.10564.1.S1_AT similar to sorting nexin 17 gga
CHICKEN:GGAAFFX.10564.2.S1_S_AT similar to sorting nexin 17 gga
HG-U133A:200991_S_AT sorting nexin 17 hs
HG-U133_PLUS_2:200991_S_AT sorting nexin 17 hs
HG-U133A_2:200991_S_AT sorting nexin 17 hs
HU35KSUBD:RC_AA402927_AT sorting nexin 17 hs
HUGENEFL:D31764_AT sorting nexin 17 hs
U133_X3P:G7661889_3P_X_AT sorting nexin 17 hs
U133_X3P:G7661889_3P_S_AT sorting nexin 17 hs
HG-U95AV2:37654_AT sorting nexin 17 hs
MOE430A:1455955_S_AT sorting nexin 17 mm
MOUSE430A_2:1455955_S_AT sorting nexin 17 mm
MOUSE430_2:1455955_S_AT sorting nexin 17 mm
MU11KSUBA:AA671350_AT sorting nexin 17 mm
MU11KSUBB:W75543_S_AT sorting nexin 17 mm
MG-U74AV2:100582_AT sorting nexin 17 mm
MG-U74AV2:161257_R_AT sorting nexin 17 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93650 Hypothetical protein F17H10.3 [Caenorhabditis elegans] ref|NP_510179.2| F17H10.3 [Caenorhabditis elegans] sp|Q19532|YTDK_CAEEL Hypothetical protein F17H10.3 in chromosome X 0.0
blast T21077 hypothetical protein F17H10.3 - Caenorhabditis elegans 0.0
blast CAE61387 Hypothetical protein CBG05236 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001683 EMBL-EBI Phox-like 8.5E-24
Sequence
Target Sequence 
>C. ELEGANS:193945_AT
atgatagtaagatgttcctccgcacttgccatcaactctcgacatactcctacgaaatta
tgtccccctgttcttgtgactaccccaaaccgggtactccgtgtgaaatcaaatttggac
gccgccaaataataatgacaaccagagatgaaacgggaaaaccaaaaccaagtatattcc
gggcaaccagaatacgagtttggaggatcacacaggttatggataaaatatcgttccaat
tcgagtacttgatggccaaagacacatttgaatggatcacgttagacacggaccagagca
ttctgatgtccctgttgctccaatcaattggatcagagattctttatgagcacaataata
tgactatagagcagcaagtaatgaaggagaaacattcaaaaggaaactatgtggagaaga
gtgaaaaacttccgcgtgaccccaaaaagccaatcatcgttttgaaaaatgaggttgaag
atacggatcccttgggtgtaatggaacattaccacaactataaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAGTAAGATGTTCCTCCGCAC 326 47 842 Antisense
AACTCTCGACATACTCCTACGAAAT 611 139 875 Antisense
CCGGGTACTCCGTGTGAAATCAAAT 229 253 931 Antisense
TGGACGCCGCCAAATAATAATGACA 262 549 957 Antisense
AACCAAGTATATTCCGGGCAACCAG 203 147 1007 Antisense
GTTCCAATTCGAGTACTTGATGGCC 413 431 1074 Antisense
GGATCACGTTAGACACGGACCAGAG 239 511 1115 Antisense
CAGAGCATTCTGATGTCCCTGTTGC 77 207 1135 Antisense
GACCCCAAAAAGCCAATCATCGTTT 649 381 1279 Antisense
TGAAGATACGGATCCCTTGGGTGTA 39 573 1317 Antisense
GGAACATTACCACAACTATAACCGG 139 529 1344 Antisense
Sequence Source Affymetrix Proprietary Database