[Home] | [Total List]

[193944_at] protein transport protein SEC61 gamma subunit

Description F32D8.6 /REP_DB=WormBase Gene ID /WP=CE05785 /GEN=emo-1 /TR=SW:Q19967 /GB=CAA98458.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein transport protein SEC61 gamma subunit
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 01      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 16      6grp_total > 09      4grp_total > 49      6grp_cgc > 10      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6817
1 2 3 4 range
A 6757.7
(-3)
P 		12229.2
(3)
P 		12027.8
(2.8)
P 		7739
(-1.9)
P 		5472
B 6677.3
(-3)
P 		11480.9
(1.2)
P 		13493.9
(3)
P 		6997
(-2.7)
P 		6817
C 7744.7
(-1.9)
P 		11754
(2.7)
P 		12015.3
(3)
P 		6769.5
(-3)
P 		5246
avr 7059.9
(-3) 		11821.4
(2.2) 		12512.3
(3) 		7168.5
(-2.9) 		5452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5110
1 2 3 4 5 6 range
A 9309.4
(3)
P 		7269.8
(-0.1)
P 		8602.1
(1.9)
P 		8323.4
(1.5)
P 		6551.3
(-1.2)
P 		5324
(-3)
P 		3985
B 10433.9
(3)
P 		7629.4
(-0.5)
P 		8184.4
(0.2)
P 		7761
(-0.3)
P 		7588.3
(-0.6)
P 		5639.3
(-3)
P 		4795
C 10097.2
(3)
P 		7244.6
(-0.7)
P 		6851.3
(-1.3)
P 		7315
(-0.7)
P 		7927.9
(0.2)
P 		5526.4
(-3)
P 		4571
avr 9946.8
(3) 		7381.3
(-0.5) 		7879.3
(0.2) 		7799.8
(0.1) 		7355.8
(-0.5) 		5496.6
(-3) 		4450
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3055
1 2 3 4 range
A 2460.5
(1)
P 		2654.6
(1.5)
P 		3144.3
(3)
P 		1132.8
(-3)
P 		2012
B 2129.3
(-0.7)
P 		2835.5
(1.9)
P 		3126.9
(3)
P 		1491.1
(-3)
P 		1636
C 2563.7
(-0.2)
P 		3379.4
(1.4)
P 		4187.7
(3)
P 		1141.4
(-3)
P 		3046
avr 2384.5
(0) 		2956.5
(1.6) 		3486.3
(3) 		1255.1
(-3) 		2231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2446
1 2 3 4 5 6 range
A 1716.1
(-1)
P 		2585.5
(3)
P 		1873.4
(-0.3)
P 		2111
(0.8)
P 		1976.9
(0.2)
P 		1296.2
(-3)
P 		1289
B 3630.5
(3)
P 		2539.5
(-1)
P 		1987.4
(-3)
P 		2055.6
(-2.8)
P 		3083
(1)
P 		2102.9
(-2.6)
P 		1643
C 3742.6
(3)
P 		2210.6
(-1)
P 		1743.8
(-2.3)
P 		1471.1
(-3)
P 		2565.4
(-0.1)
P 		1850
(-2)
P 		2272
avr 3029.7
(3) 		2445.2
(0.3) 		1868.2
(-2.4) 		1879.2
(-2.4) 		2541.8
(0.7) 		1749.7
(-3) 		1280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12833
Sequence Type Exemplar sequence
Representative Public ID F32D8.6 NCBI
Target Description F32D8.6 /REP_DB=WormBase Gene ID /WP=CE05785 /GEN=emo-1 /TR=SW:Q19967 /GB=CAA98458.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein transport protein SEC61 gamma subunit
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073377 NCBI Caenorhabditis elegans EndoMitotic Oocytes family member (emo-1) (emo-1) mRNA, complete cds. 11/11 None
SNAP00000041032 ENSEMBL cdna:SNAP chromosome:CEL140:V:10899467:10899722:-1 11/11 None
GENEFINDER00000041040 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10899467:10899722:-1 11/11 None
F32D8.6.2 ENSEMBL cdna:known chromosome:CEL140:V:10899243:10899730:-1 gene:F32D8.6 11/11 None
F32D8.6.1 ENSEMBL cdna:known chromosome:CEL140:V:10899243:10899732:-1 gene:F32D8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10899466-10899722(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein transport protein SEC61 gamma subunit
Gene Symbol emo-1
Ensembl F32D8.6
Entrez Gene 179510 Entrez gene
SwissProt Q19967 EMBL-EBI
WormBase CE05785 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248512_AT protein transport protein SEC61 gamma subunit, putative at
CANINE:1582501_AT Sec61 gamma subunit cfa
CANINE_2:CFA.754.1.S1_AT Sec61 gamma subunit cfa
CANINE_2:CFAAFFX.4941.1.S1_S_AT Sec61 gamma subunit cfa
DROSOPHILA_2:1639419_AT dm
DROSGENOME1:147060_AT dm
HG-U133A:203484_AT Sec61 gamma subunit hs
HG-U133_PLUS_2:203484_AT Sec61 gamma subunit hs
HG-FOCUS:203484_AT Sec61 gamma subunit hs
HG-U133A_2:203484_AT Sec61 gamma subunit hs
HU35KSUBA:D79052_S_AT Sec61 gamma subunit hs
U133_X3P:G7657545_3P_AT Sec61 gamma subunit hs
HG-U95AV2:39169_AT Sec61 gamma subunit hs
MU11KSUBA:U11027_S_AT SEC61, gamma subunit mm
MU11KSUBB:MSA.33501.0_F_AT SEC61, gamma subunit mm
MG-U74AV2:92636_F_AT SEC61, gamma subunit mm
MOE430A:1423090_X_AT SEC61, gamma subunit mm
MOUSE430A_2:1423090_X_AT SEC61, gamma subunit mm
MOUSE430_2:1423090_X_AT SEC61, gamma subunit mm
MU11KSUBB:MSA.285.0_S_AT SEC61, gamma subunit mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6605 protein targeting inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
5623 cell inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
15450 protein translocase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98458 Hypothetical protein F32D8.6 [Caenorhabditis elegans] ref|NP_505778.1| EndoMitotic Oocytes family member (emo-1) [Caenorhabditis elegans] sp|Q19967|SC61G_CAEEL Protein transport protein SEC61 gamma subunit gb|AAC47274.1| Sec61p gamma homolog emb|CAE64921.1| Hypothetical protein CBG09741 [Caenorhabditis briggsae] emb|CAE64910.1| Hypothetical protein CBG09730 [Caenorhabditis briggsae] 6.0E-22
blast AAK72260 SEC61 [Branchiostoma belcheri] sp|Q962X7|SC61G_BRABE Protein transport protein SEC61 gamma subunit 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001901 EMBL-EBI Protein secE/sec61-gamma protein 2.1E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505778.1 1 36-58
F32D8.6.2 1 36-58
F32D8.6.1 1 36-58
SNAP00000041032 1 36-58
GENEFINDER00000041040 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:193944_AT
aattccaagctttgattgagccagctcgccagttctccaaagactcgtaccgtctagtca
agagatgtactaagccagacagaaaagaataccagaagatcgctatggccacagcaatcg
gatttgctatcatgggattcatcggattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCAAGCTTTGATTGAGCCAGC 573 177 20 Antisense
TTTGATTGAGCCAGCTCGCCAGTTC 681 667 30 Antisense
TCCAAAGACTCGTACCGTCTAGTCA 158 587 55 Antisense
GACTCGTACCGTCTAGTCAAGAGAT 53 373 61 Antisense
GTCAAGAGATGTACTAAGCCAGACA 656 463 76 Antisense
AAGCCAGACAGAAAAGAATACCAGA 436 147 91 Antisense
GAATACCAGAAGATCGCTATGGCCA 362 325 106 Antisense
AGATCGCTATGGCCACAGCAATCGG 473 65 116 Antisense
GCTATGGCCACAGCAATCGGATTTG 635 301 121 Antisense
ATCGGATTTGCTATCATGGGATTCA 288 35 136 Antisense
GCTATCATGGGATTCATCGGATTCT 349 303 145 Antisense
Sequence Source Affymetrix Proprietary Database