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[193943_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar).

Description W02A2.7 /REP_DB=WormBase Gene ID /WP=CE21237 /GEN=mex-5 /TR=Q9XUB2 /GB=CAB05310.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster 6grp_total > 88      4grp_total > 02      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 10.3
(-2.8)
A 		7
(-3)
A 		7.6
(-3)
A 		115.2
(3)
A 		108
B 24.5
(-0.1)
A 		8.4
(-2.5)
A 		4.7
(-3)
A 		45.8
(3)
A 		41
C 3.7
(-3)
A 		7.6
(-2.7)
A 		20.2
(-1.6)
A 		74.3
(3)
A 		71
avr 12.8
(-2.6) 		7.7
(-3) 		10.8
(-2.7) 		78.4
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1619
1 2 3 4 5 6 range
A 6.6
(-3)
A 		7.2
(-3)
A 		15.7
(-3)
A 		119
(-2.6)
A 		598.9
(-0.8)
P 		1624.7
(3)
P 		1618
B 5.4
(-3)
A 		5.3
(-3)
A 		25.6
(-2.9)
A 		137.8
(-2.3)
A 		531.2
(-0.3)
P 		1160.7
(3)
P 		1155
C 16.1
(-3)
A 		9.5
(-3)
A 		66.9
(-2.7)
A 		105.4
(-2.5)
A 		836.5
(1.3)
P 		1162.9
(3)
P 		1153
avr 9.4
(-3) 		7.3
(-3) 		36.1
(-2.9) 		120.7
(-2.5) 		655.5
(-0) 		1316.1
(3) 		1309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.7
(-2.1)
A 		1.5
(-3)
A 		2
(-2.8)
A 		16.9
(3)
A 		15
B 7.8
(1.6)
A 		2.1
(-2.3)
A 		1.1
(-3)
A 		9.8
(3)
A 		9
C 1.2
(-3)
A 		2.2
(-2.5)
A 		7
(0.1)
A 		12.5
(3)
A 		11
avr 4.2
(-1.8) 		1.9
(-3) 		3.4
(-2.2) 		13.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.6
(-3)
A 		3.4
(-3)
A 		30.2
(-2.6)
A 		180.7
(-0.3)
P 		395.6
(3)
P 		394
B 1.9
(-3)
A 		1.8
(-3)
A 		6.2
(-2.9)
A 		36.5
(-2.5)
A 		215.8
(-0)
P 		432.8
(3)
P 		431
C 6
(-3)
A 		2.9
(-3)
A 		17
(-2.8)
A 		21.2
(-2.7)
A 		270.7
(1.2)
P 		389.3
(3)
P 		386
avr 3
(-3) 		2.4
(-3) 		8.9
(-2.9) 		29.3
(-2.6) 		222.4
(0.3) 		405.9
(3) 		404
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8806
Sequence Type Exemplar sequence
Representative Public ID W02A2.7 NCBI
Target Description W02A2.7 /REP_DB=WormBase Gene ID /WP=CE21237 /GEN=mex-5 /TR=Q9XUB2 /GB=CAB05310.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070165 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-5) (mex-5) mRNA, complete cds. 11/11 None
SNAP00000017639 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13353699:13355512:1 11/11 None
GENEFINDER00000017645 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13353699:13355512:1 11/11 None
W02A2.7 ENSEMBL cdna:known chromosome:CEL140:IV:13353692:13356073:1 gene:W02A2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13353704-13355518(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar).
Gene Symbol mex-5
Ensembl W02A2.7
Entrez Gene 178296 Entrez gene
SwissProt Q9XUB2 EMBL-EBI
WormBase CE21237 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05310 Hypothetical protein W02A2.7 [Caenorhabditis elegans] ref|NP_502566.1| Muscle EXcess family member (mex-5) [Caenorhabditis elegans] sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 0.0
blast CAE66691 Hypothetical protein CBG12031 [Caenorhabditis briggsae] 1.0E-155
blast CAA88088 Hypothetical protein AH6.5 [Caenorhabditis elegans] ref|NP_496043.1| Muscle EXcess family member (mex-6) [Caenorhabditis elegans] sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.8E-6
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.8E-11
Sequence
Target Sequence 
>C. ELEGANS:193943_AT
ccacccaactacaagactcgtctttgcatgatgcacgcatctggaatcaaaccatgtgat
atgggtgctcgatgcaagtttgctcatgggctcaaagagctcagagctactgatgctccg
gctcgctatccgaacaacaagtacaagacaaagctgtgcaagaactttgcgcgtggagga
actggattctgcccgtatggacttcgttgcgagtttgttcatccaacggacaaggaattc
cagaatattcctccatatcagcgcatgtctcacgatgaccaggattacgaccaggatgtc
attccagaagactacgttgtcgctagacatcagccacgattcatgcgtacaggtggaaga
gctaccacgccgaccaaagtgatgctcaaacatcgaaatgtggcaggctcaatgatgtgc
ctctccaatgctggtcgcgatcttcaagccggaggtgattacaatcaaccggaatccaac
gaagacgacttgccaccacacttgagacggaatcgcagagaaaatccaccgatgaacaag
cgtcgcacatctctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCCAACTACAAGACTCGTCTTT 88 275 814 Antisense
CTCAGAGCTACTGATGCTCCGGCTC 612 227 913 Antisense
GCGTGGAGGAACTGGATTCTGCCCG 512 289 984 Antisense
ACTTCGTTGCGAGTTTGTTCATCCA 70 105 1014 Antisense
ATCAGCGCATGTCTCACGATGACCA 317 29 1070 Antisense
GTCGCTAGACATCAGCCACGATTCA 206 475 1132 Antisense
GCTACCACGCCGACCAAAGTGATGC 205 303 1174 Antisense
GGCAGGCTCAATGATGTGCCTCTCC 39 537 1215 Antisense
CCAATGCTGGTCGCGATCTTCAAGC 384 277 1238 Antisense
AATCCAACGAAGACGACTTGCCACC 577 165 1286 Antisense
TGAACAAGCGTCGCACATCTCTCAG 481 573 1346 Antisense
Sequence Source Affymetrix Proprietary Database