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[193941_at] ATPases associated with various cellular activities (AAA)

Description Y39A1A.12 /REP_DB=WormBase Gene ID /WP=CE19131 /TR=Q9XX17 /GB=CAA21023.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATPases associated with various cellular activities (AAA)
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 139.2
(1.2)
P 		122.1
(-0.2)
P 		162
(3)
P 		87.3
(-3)
P 		75
B 131.2
(-2)
P 		192.2
(3)
P 		155.5
(-0)
P 		119.7
(-3)
P 		73
C 176.8
(3)
P 		162
(1.8)
P 		138.1
(-0.2)
P 		105.3
(-3)
P 		72
avr 149.1
(1.9) 		158.8
(3) 		151.9
(2.2) 		104.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 815
1 2 3 4 5 6 range
A 171.4
(-2.9)
P 		176.6
(-2.8)
P 		159.5
(-3)
P 		251.2
(-2.2)
P 		411.8
(-0.7)
P 		810.7
(3)
P 		651
B 153.8
(-2.8)
P 		134.2
(-3)
P 		150.1
(-2.9)
P 		240
(-2.2)
P 		433.1
(-0.6)
P 		881.7
(3)
P 		748
C 161
(-2.7)
P 		116.6
(-3)
P 		135.3
(-2.9)
P 		244.4
(-2.1)
P 		388
(-1)
P 		931.2
(3)
P 		815
avr 162.1
(-2.8) 		142.5
(-3) 		148.3
(-3) 		245.2
(-2.2) 		411
(-0.8) 		874.5
(3) 		732
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 50.7
(3)
P 		26.5
(-0.8)
P 		42.4
(1.7)
P 		12.8
(-3)
P 		38
B 41.8
(1.4)
P 		47.5
(3)
P 		36
(-0.1)
P 		25.5
(-3)
P 		22
C 58.5
(3)
P 		46.6
(1.2)
P 		48.1
(1.5)
P 		17.8
(-3)
P 		41
avr 50.3
(3) 		40.2
(1.1) 		42.2
(1.5) 		18.7
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 31.6
(-3)
P 		62.8
(-1.9)
P 		34.7
(-2.9)
P 		63.7
(-1.8)
P 		124.3
(0.4)
P 		197.4
(3)
P 		166
B 53.5
(-2.7)
P 		44.7
(-2.8)
P 		36.5
(-3)
P 		63.6
(-2.4)
P 		176
(-0.1)
P 		328.8
(3)
P 		292
C 59.7
(-2.5)
P 		35.6
(-3)
P 		34.4
(-3)
P 		49.2
(-2.7)
P 		125.5
(-1)
P 		311.7
(3)
P 		277
avr 48.3
(-2.7) 		47.7
(-2.7) 		35.2
(-3) 		58.8
(-2.4) 		141.9
(-0.4) 		279.3
(3) 		244
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7951
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.12 NCBI
Target Description Y39A1A.12 /REP_DB=WormBase Gene ID /WP=CE19131 /TR=Q9XX17 /GB=CAA21023.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATPases associated with various cellular activities (AAA)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066946 NCBI Caenorhabditis elegans Y39A1A.12 (Y39A1A.12) mRNA, complete cds. 11/11 None
SNAP00000012914 ENSEMBL cdna:SNAP chromosome:CEL140:III:10641242:10645836:1 11/11 None
GENEFINDER00000012943 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10643011:10645878:1 11/11 None
Y39A1A.12.1 ENSEMBL cdna:known chromosome:CEL140:III:10642942:10645926:1 gene:Y39A1A.12 11/11 None
Y39A1A.12.2 ENSEMBL cdna:known chromosome:CEL140:III:10642942:10646948:1 gene:Y39A1A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10643006-10645832(+) 99.22 100.0
Public Domain and Genome References
Gene Title ATPases associated with various cellular activities (AAA)
Ensembl Y39A1A.12
Entrez Gene 176486 Entrez gene
SwissProt Q9XX17 EMBL-EBI
WormBase CE19131 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586385_AT similar to origin recognition complex, subunit 1 cfa
CANINE_2:CFA.8552.1.A1_AT similar to origin recognition complex, subunit 1 cfa
CANINE_2:CFA.8552.1.A1_S_AT similar to origin recognition complex, subunit 1 cfa
CANINE_2:CFAAFFX.6560.1.S1_AT similar to origin recognition complex, subunit 1 cfa
DROSOPHILA_2:1626652_AT Origin recognition complex subunit 1 dm
DROSGENOME1:153737_AT Origin recognition complex subunit 1 dm
CHICKEN:GGAAFFX.11562.1.S1_S_AT origin recognition complex, subunit 1-like (yeast) gga
HG-U95AV2:38564_AT origin recognition complex, subunit 1-like (yeast) hs
HUGENEFL:U40152_S_AT origin recognition complex, subunit 1-like (yeast) hs
HG-U133A:205085_AT origin recognition complex, subunit 1-like (yeast) hs
HG-U133_PLUS_2:205085_AT origin recognition complex, subunit 1-like (yeast) hs
HG-FOCUS:205085_AT origin recognition complex, subunit 1-like (yeast) hs
HG-U133A_2:205085_AT origin recognition complex, subunit 1-like (yeast) hs
U133_X3P:G4758849_3P_X_AT origin recognition complex, subunit 1-like (yeast) hs
U133_X3P:G4758849_3P_AT origin recognition complex, subunit 1-like (yeast) hs
MOUSE430_2:1422663_AT origin recognition complex, subunit 1-like (S.cereviaiae) mm
MOE430A:1422663_AT origin recognition complex, subunit 1-like (S.cereviaiae) mm
MOUSE430A_2:1422663_AT origin recognition complex, subunit 1-like (S.cereviaiae) mm
MG-U74AV2:92458_AT origin recognition complex, subunit 1-like (S.cereviaiae) mm
MOE430B:1443172_AT origin recognition complex, subunit 1-like (S.cereviaiae) mm
MOUSE430_2:1443172_AT origin recognition complex, subunit 1-like (S.cereviaiae) mm
RG-U34B:RC_AI059490_AT origin recognition complex, subunit 1-like (S.cereviaiae) rn
RAE230B:1385522_AT origin recognition complex, subunit 1-like (S.cereviaiae) rn
RAT230_2:1385522_AT origin recognition complex, subunit 1-like (S.cereviaiae) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21023 Hypothetical protein Y39A1A.12 [Caenorhabditis elegans] ref|NP_499347.1| Y39A1A.12 [Caenorhabditis elegans] 0.0
blast CAE71424 Hypothetical protein CBG18335 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 5.0E-9
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:193941_AT
ttcccggaacgaatgctttgccaacggaatgctagtcgacttgacaaacgtcgcctcgta
ttccagccttatcaacacgagcaaatcgaggaaattgtgcgtgcgaggctccaaggatcc
aatttaattgatccgaaagctgttgaacttgtcgccaagaaggtcgctatgaacactgga
gacttacggcaggctctcgattttctgtgtcgagcgattcgtgttgcagtagagagaaaa
tcggaaaagctcgagttgtcgcatgtgattgctgctcagaatgcggtgctggaacctctt
aaatatcgtcttgtaaagggattaaggcttcatcaattcacattgttccggacaattgaa
tctatgacccgcgaacaagaggagatcatcttcgcaaacatctacaaaaactactgcata
atctgctcagaagtctctggaatcggcccggccaccgatagcttcgcctacggaatgctc
cttcaactggcgagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCGGAACGAATGCTTTGCCAAC 581 697 1294 Antisense
ACTTGACAAACGTCGCCTCGTATTC 539 101 1332 Antisense
GTATTCCAGCCTTATCAACACGAGC 511 451 1351 Antisense
CGTGCGAGGCTCCAAGGATCCAATT 445 245 1393 Antisense
GAAAGCTGTTGAACTTGTCGCCAAG 226 359 1428 Antisense
ACTGGAGACTTACGGCAGGCTCTCG 334 97 1468 Antisense
GTGTCGAGCGATTCGTGTTGCAGTA 296 487 1500 Antisense
GTTGTCGCATGTGATTGCTGCTCAG 133 437 1548 Antisense
GAATGCGGTGCTGGAACCTCTTAAA 217 331 1572 Antisense
CGATAGCTTCGCCTACGGAATGCTC 239 249 1749 Antisense
GAATGCTCCTTCAACTGGCGAGCAC 622 329 1766 Antisense
Sequence Source Affymetrix Proprietary Database