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[193938_s_at]

Description T16H12.5 /REP_DB=WormBase Gene ID /WP=CE00510 /TR=SW:P34568 /GB=CAA83138.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Kruppel-like zinc finger protein (outside zinc fingers)
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 83      6grp_total > 49      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1000
1 2 3 4 range
A 479.1
(-1.6)
P 		306.8
(-3)
P 		334.4
(-2.8)
P 		1048.6
(3)
P 		742
B 428.4
(-2.4)
P 		338.1
(-3)
P 		348.4
(-2.9)
P 		1253.2
(3)
P 		915
C 481.9
(-2.2)
P 		425
(-2.5)
P 		351.1
(-3)
P 		1307.1
(3)
P 		956
avr 463.1
(-2.2) 		356.6
(-2.9) 		344.6
(-3) 		1203
(3) 		858

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 516
(0.3)
P 		539
(0.6)
P 		277.3
(-3)
P 		455.3
(-0.5)
P 		546.9
(0.8)
P 		708.2
(3)
P 		431
B 500
(-0.4)
P 		473.3
(-0.7)
P 		293.1
(-3)
P 		375.9
(-1.9)
P 		578.1
(0.6)
P 		766.1
(3)
P 		473
C 776.8
(3)
P 		440.8
(-1.2)
P 		432.9
(-1.3)
P 		299.9
(-3)
P 		619.1
(1)
P 		534.2
(-0.1)
P 		477
avr 597.6
(1.7) 		484.4
(-0.3) 		334.4
(-3) 		377
(-2.2) 		581.4
(1.4) 		669.5
(3) 		335
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 174.4
(3)
P 		66.6
(-3)
P 		87.4
(-1.8)
P 		153.5
(1.8)
P 		108
B 136.6
(-1.2)
P 		83.5
(-2.9)
P 		80.7
(-3)
P 		267.1
(3)
P 		186
C 159.5
(-0.7)
P 		122.2
(-3)
P 		122.4
(-3)
P 		220.4
(3)
P 		98
avr 156.8
(0.2) 		90.8
(-3) 		96.8
(-2.7) 		213.7
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 95.1
(-1.4)
P 		191.7
(3)
P 		60.4
(-3)
P 		115.5
(-0.5)
P 		165
(1.8)
P 		172.4
(2.1)
P 		131
B 174
(-0.1)
P 		157.5
(-0.6)
P 		71.2
(-3)
P 		99.6
(-2.2)
P 		234.9
(1.6)
P 		285.7
(3)
P 		215
C 287.9
(3)
P 		134.5
(-1)
P 		110.2
(-1.7)
P 		60.3
(-3)
P 		200.3
(0.7)
P 		178.8
(0.1)
P 		228
avr 185.7
(1.8) 		161.2
(0.7) 		80.6
(-3) 		91.8
(-2.5) 		200.1
(2.4) 		212.3
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193938_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7901
Sequence Type Exemplar sequence
Representative Public ID T16H12.5 NCBI
Target Description T16H12.5 /REP_DB=WormBase Gene ID /WP=CE00510 /TR=SW:P34568 /GB=CAA83138.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Kruppel-like zinc finger protein (outside zinc fingers)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027594(11), NM_001027593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027594 NCBI Caenorhabditis elegans T16H12.5b (T16H12.5) mRNA, complete cds. 11/11 None
NM_001027593 NCBI Caenorhabditis elegans T16H12.5a (T16H12.5) mRNA, complete cds. 11/11 None
SNAP00000013070 ENSEMBL cdna:SNAP chromosome:CEL140:III:10091092:10092966:-1 11/11 None
GENEFINDER00000013085 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10091092:10097939:-1 11/11 None
T16H12.5b.1 ENSEMBL cdna:known chromosome:CEL140:III:10090750:10093022:-1 gene:T16H12.5 11/11 None
T16H12.5b.2 ENSEMBL cdna:known chromosome:CEL140:III:10090750:10097958:-1 gene:T16H12.5 11/11 None
T16H12.5b.3 ENSEMBL cdna:known chromosome:CEL140:III:10090750:10093028:-1 gene:T16H12.5 11/11 None
T16H12.5a ENSEMBL cdna:known chromosome:CEL140:III:10091092:10097939:-1 gene:T16H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10091087-10092962(-) 100.0 100.0
Public Domain and Genome References
Ensembl T16H12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83138 Hypothetical protein T16H12.5a [Caenorhabditis elegans] ref|NP_001022764.1| T16H12.5a [Caenorhabditis elegans] sp|P34568|YNV5_CAEEL Hypothetical protein T16H12.5 in chromosome III 0.0
blast CAI58651 Hypothetical protein T16H12.5b [Caenorhabditis elegans] ref|NP_001022765.1| T16H12.5b [Caenorhabditis elegans] pir||S42384 Kruppel-like protein - Caenorhabditis elegans 0.0
blast CAE65045 Hypothetical protein CBG09886 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.9E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.5E-30
Pfam IPR002083 EMBL-EBI MATH 1.9E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.5E-30
Sequence
Target Sequence 
>C. ELEGANS:193938_S_AT
ttccaccatgccgactagcagatgatatgtacggattattcgacaacaaacagttctccg
atttcacattggtctgcaaatccgatctaggaagtccaacacagacttttcacattcaca
aggcaattcttgctgcccggtcgcgagttttctcggcaatgttcgagcatcatatgcagg
aatctgacacgaatatgacaacggttgatgatattgagccagaagttatgcgtgagcttc
ttgtctacatgtatacaggacagacaaaatacattgaacaaatggctcaaagtttgattg
cagctgctgataaatatcaattagatcgactgaaagtaatgtgcgaacaagccctctgtt
atcaactgacaacggataatgctagtttgacactgatgcttgctgatatgtactcggcat
ctcagctcagagctcactctatcaactttatcaatgttaatgcaaatgaggtaatggaca
cagaaggctgggaagacctcgttcgagaccatcccaaactattggaagaagtctttagag
cactagcaactcagcaaactcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCACCATGCCGACTAGCAGATGA 570 699 623 Antisense
TTCTCCGATTTCACATTGGTCTGCA 176 693 676 Antisense
TCCAACACAGACTTTTCACATTCAC 422 587 717 Antisense
CACAAGGCAATTCTTGCTGCCCGGT 651 193 739 Antisense
CGGTCGCGAGTTTTCTCGGCAATGT 412 239 760 Antisense
ATGCGTGAGCTTCTTGTCTACATGT 138 43 850 Antisense
ACAAGCCCTCTGTTATCAACTGACA 465 113 969 Antisense
TGATATGTACTCGGCATCTCAGCTC 256 565 1026 Antisense
GAGCTCACTCTATCAACTTTATCAA 52 389 1052 Antisense
GGGAAGACCTCGTTCGAGACCATCC 685 489 1112 Antisense
AGCACTAGCAACTCAGCAAACTCCT 2 77 1161 Antisense
Sequence Source Affymetrix Proprietary Database