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[193936_at] plasma cell membrane protein and phosphodiesterase I (weak)

Description T03G6.3 /REP_DB=WormBase Gene ID /WP=CE28075 /TR=Q22129 /GB=AAA81706.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=plasma cell membrane protein and phosphodiesterase I (weak)
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 41      6grp_total > 15      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 632
1 2 3 4 range
A 764.3
(3)
P 		538.1
(0.9)
P 		516.7
(0.6)
P 		132.3
(-3)
P 		632
B 603
(1.8)
P 		725.2
(3)
P 		481.6
(0.5)
P 		138
(-3)
P 		587
C 647.8
(2.4)
P 		699.2
(3)
P 		611.2
(2)
P 		172.9
(-3)
P 		526
avr 671.7
(3) 		654.2
(2.8) 		536.5
(1.5) 		147.7
(-3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 633
1 2 3 4 5 6 range
A 642.8
(0.5)
P 		685.5
(1.7)
P 		734.8
(3)
P 		523.5
(-2.7)
P 		675.3
(1.4)
P 		511.9
(-3)
P 		223
B 1093.8
(3)
P 		928
(1.1)
P 		671.1
(-1.9)
P 		598.8
(-2.8)
P 		718.8
(-1.4)
P 		578
(-3)
P 		516
C 818.8
(-0.1)
P 		1144.9
(3)
P 		517.8
(-3)
P 		602.3
(-2.2)
P 		531.3
(-2.9)
P 		552.3
(-2.7)
P 		627
avr 851.8
(1.9) 		919.5
(3) 		641.2
(-1.5) 		574.9
(-2.6) 		641.8
(-1.5) 		547.4
(-3) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 278.3
(3)
P 		116.8
(-0.7)
P 		135.1
(-0.3)
P 		19.4
(-3)
P 		259
B 192.3
(3)
P 		179.1
(2.5)
P 		111.6
(0)
P 		29.4
(-3)
P 		163
C 214.4
(3)
P 		201
(2.6)
P 		213
(3)
P 		29.2
(-3)
P 		185
avr 228.3
(3) 		165.6
(1.1) 		153.2
(0.8) 		26
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 118.5
(-3)
P 		243.8
(3)
P 		160
(-1)
P 		132.8
(-2.3)
P 		203.8
(1.1)
P 		124.6
(-2.7)
P 		125
B 380.6
(3)
P 		308.9
(1.1)
P 		163
(-2.9)
P 		158.6
(-3)
P 		292
(0.6)
P 		215.5
(-1.5)
P 		222
C 303.5
(1.8)
P 		349.3
(3)
P 		131.8
(-2.7)
P 		121.1
(-3)
P 		171.9
(-1.7)
P 		184.9
(-1.3)
P 		228
avr 267.5
(1.8) 		300.7
(3) 		151.6
(-2.5) 		137.5
(-3) 		222.6
(0.1) 		175
(-1.6) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193936_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18582
Sequence Type Exemplar sequence
Representative Public ID T03G6.3 NCBI
Target Description T03G6.3 /REP_DB=WormBase Gene ID /WP=CE28075 /TR=Q22129 /GB=AAA81706.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=plasma cell membrane protein and phosphodiesterase I (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076069 NCBI Caenorhabditis elegans T03G6.3 (T03G6.3) mRNA, complete cds. 11/11 None
SNAP00000022494 ENSEMBL cdna:SNAP chromosome:CEL140:X:2611228:2614176:-1 11/11 None
GENEFINDER00000022496 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2611228:2615719:-1 11/11 None
T03G6.3.1 ENSEMBL cdna:known chromosome:CEL140:X:2610843:2615719:-1 gene:T03G6.3 11/11 None
T03G6.3.2 ENSEMBL cdna:known chromosome:CEL140:X:2610843:2615720:-1 gene:T03G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2611227-2615719(-) 100.0 100.0
Public Domain and Genome References
Gene Title plasma cell membrane protein and phosphodiesterase I (weak)
Ensembl T03G6.3
Entrez Gene 180561 Entrez gene
SwissProt Q22129 EMBL-EBI
WormBase CE28075 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598067_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CANINE:1585325_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CANINE:1583936_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CANINE_2:CFA.12301.1.A1_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CANINE_2:CFA.6996.1.A1_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CANINE_2:CFA.6996.1.A1_S_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CANINE_2:CFAAFFX.12520.1.S1_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 cfa
CHICKEN:GGA.8153.1.S1_AT similar to ectonucleotide pyrophosphatase/phosphodiesterase 6 gga
HG-U133_PLUS_2:229916_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 hs
HG-U133B:229916_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 hs
U133_X3P:HS.179075.0.S1_3P_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 hs
HG-U95E:67040_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 hs
MOE430B:1438785_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 mm
MOUSE430_2:1438785_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 mm
MOE430B:1436090_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 mm
MOUSE430_2:1436090_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 mm
RG-U34A:RC_AA891719_AT ectonucleotide pyrophosphatase/phosphodiesterase 6 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9117 nucleotide metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81706 Hypothetical protein T03G6.3 [Caenorhabditis elegans] ref|NP_508470.1| T03G6.3 [Caenorhabditis elegans] 0.0
blast CAE58851 Hypothetical protein CBG02074 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 5.0E-16
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 3.7E-9
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 3.7E-9
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 2.9E-14
Pfam IPR002591 EMBL-EBI Type I phosphodiesterase/nucleotide pyrophosphatase 3.7E-9
Sequence
Target Sequence 
>C. ELEGANS:193936_AT
gatcatggttttcacgaaccctgaagatgagggaactgttcactacgagttcagcgtgtg
cgaagtgtggtcaccaatgggagactacgacgagaacgacactccattcgtgaagacata
cagaatgtctgaattgcccgacgatcttcactggaaaaactcgcggtttatgagtggtgt
tgtactgattacaaagccaggaacaagtgttgtgacaaaagaacttccaactgttccaca
cagcggtgacccaacaattgacgcaaaacaagcgtccggctgggagccataccacgacga
tatgaaaggaatctttgttgctcggggaccagcattcagagaaaacgaacgattcggccc
aatcgaaatcgtcgatgtctatcagatgctcttgaacattctgagtatagaacctgctca
cccacacaatggaacatggacaaacgttgaaaatatgttgagtgaaggatgggagaaccg
tggtccagtcgatagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATGGTTTTCACGAACCCTGAA 338 419 813 Antisense
GTTCACTACGAGTTCAGCGTGTGCG 695 443 850 Antisense
GCGTGTGCGAAGTGTGGTCACCAAT 702 291 866 Antisense
GACGAGAACGACACTCCATTCGTGA 54 379 901 Antisense
GAATGTCTGAATTGCCCGACGATCT 618 331 935 Antisense
TCCAACTGTTCCACACAGCGGTGAC 177 587 1038 Antisense
GCAAAACAAGCGTCCGGCTGGGAGC 285 317 1075 Antisense
TGTTGCTCGGGGACCAGCATTCAGA 443 563 1128 Antisense
GTCGATGTCTATCAGATGCTCTTGA 463 473 1183 Antisense
CCTGCTCACCCACACAATGGAACAT 634 265 1225 Antisense
AGAACCGTGGTCCAGTCGATAGCTC 588 71 1286 Antisense
Sequence Source Affymetrix Proprietary Database