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[193934_s_at] Human alpha-2-macroglobulin receptor-associated protein like

Description C15C8.4 /REP_DB=WormBase Gene ID /WP=CE20506 /TR=Q18016 /GB=CAA99779.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human alpha-2-macroglobulin receptor-associated protein like
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 94      4grp_total > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 93.3
(-3)
P
136.4
(-0.9)
P
103.8
(-2.5)
P
215.1
(3)
P
122
B 172
(-0.7)
P
123.5
(-2.5)
P
111
(-3)
P
268.9
(3)
P
158
C 178
(-0.8)
P
128.6
(-3)
P
160.3
(-1.6)
P
263.9
(3)
P
135
avr 147.8
(-1.9)
129.5
(-2.8)
125
(-3)
249.3
(3)
124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 97.1
(-3)
P
114.5
(-0.9)
P
132
(1.2)
P
146.4
(3)
P
144.6
(2.8)
P
110.6
(-1.4)
P
49
B 131
(-1.1)
P
150.4
(-0.3)
P
86
(-3)
P
141.6
(-0.7)
P
228.5
(3)
P
158.8
(0.1)
P
143
C 210.6
(1.4)
P
152.4
(-1.4)
P
130.7
(-2.5)
P
119.8
(-3)
P
242.9
(3)
P
222.8
(2)
P
123
avr 146.2
(-1)
139.1
(-1.5)
116.2
(-3)
135.9
(-1.7)
205.3
(3)
164.1
(0.2)
89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 34
(3)
P
29.6
(-0.8)
P
27.1
(-3)
P
31.5
(0.8)
P
7
B 54.9
(2.5)
P
30.5
(-2.1)
P
25.7
(-3)
P
57.3
(3)
P
32
C 58.9
(3)
P
37
(-3)
P
55.9
(2.2)
P
44.5
(-0.9)
P
22
avr 49.3
(3)
32.4
(-3)
36.2
(-1.7)
44.4
(1.3)
17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 17.9
(-3)
P
40.7
(2.3)
P
28.8
(-0.5)
P
37.1
(1.5)
P
43.6
(3)
P
26.9
(-0.9)
P
26
B 45.6
(-0.9)
P
50.1
(-0.6)
P
20.9
(-3)
P
37.5
(-1.6)
P
92.8
(3)
P
59.2
(0.2)
P
72
C 78
(2.9)
P
46.5
(-0.5)
P
33.3
(-2)
P
24.1
(-3)
P
78.6
(3)
P
74.6
(2.6)
P
55
avr 47.2
(-0.3)
45.8
(-0.5)
27.7
(-3)
32.9
(-2.3)
71.7
(3)
53.6
(0.5)
44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14753
Sequence Type Exemplar sequence
Representative Public ID C15C8.4 NCBI
Target Description C15C8.4 /REP_DB=WormBase Gene ID /WP=CE20506 /TR=Q18016 /GB=CAA99779.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human alpha-2-macroglobulin receptor-associated protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073786(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_073786 NCBI Caenorhabditis elegans C15C8.4 (C15C8.4) mRNA, complete cds. 11/11 None
SNAP00000030244 ENSEMBL cdna:SNAP chromosome:CEL140:V:12748135:12750053:-1 9/11 None
GENEFINDER00000030250 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12748135:12750053:-1 11/11 None
C15C8.4.1 ENSEMBL cdna:known chromosome:CEL140:V:12747850:12750053:-1 gene:C15C8.4 11/11 None
C15C8.4.2 ENSEMBL cdna:known chromosome:CEL140:V:12748135:12750054:-1 gene:C15C8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12748134-12750053(-) 100.0 100.0
Public Domain and Genome References
Gene Title Human alpha-2-macroglobulin receptor-associated protein like
Ensembl C15C8.4
Entrez Gene 179745 Entrez gene
SwissProt Q18016 EMBL-EBI
WormBase CE20506 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99779 Hypothetical protein C15C8.4 [Caenorhabditis elegans] ref|NP_506187.1| C15C8.4 [Caenorhabditis elegans] 0.0
blast ABA18178 putative low density lipoprotein receptor associated protein (37.4 kD) [Caenorhabditis elegans] 1.0E-171
blast ABA18178 putative low density lipoprotein receptor associated protein (37.4 kD) [Caenorhabditis elegans] 1.0E-168
blast CAA99779 Hypothetical protein C15C8.4 [Caenorhabditis elegans] ref|NP_506187.1| C15C8.4 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR010483 EMBL-EBI Alpha-2-macroglobulin RAP, C-terminal 1.0E-126
Pfam IPR010483 EMBL-EBI Alpha-2-macroglobulin RAP, C-terminal 1.2E-86
Pfam IPR010483 EMBL-EBI Alpha-2-macroglobulin RAP, C-terminal 2.1E-30
Sequence
Target Sequence
>C. ELEGANS:193934_S_AT
tcaaaaactttggtctcaagcacaaaatggtaaattctctcaaaaagaattgaacgcatt
acatggagaattaaaagaagtcgaacagaaaatgcgcgtttacgaagatcaattggatga
tttcaagaaagttcctcatgaaaattcaattcaacacgacattgaatcaattggtgataa
aacgaaaaaattgaaagcagcaaatcgagaattaaacgatcatcttgatgaagttcaccg
aaaagttacaagtgaagaattttctccattcaatgagccacgtgtaaaacgactttggaa
gttggctcaagaaaatgaaaaattgacgccccacgagttgagtgttctgaaagatgaatt
atctcattttgaaagtcagctgaagaaaatcgaattccataaggtattcttttttgttgc
aaattcctgtcctaaacgcggtaaaaatgaggaagtatctcgccttcaagaag


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TCAAAAACTTTGGTCTCAAGCACAA 692 627 396 Antisense
GAAGTCGAACAGAAAATGCGCGTTT 42 335 472 Antisense
TGCGCGTTTACGAAGATCAATTGGA 386 583 488 Antisense
GAATTTTCTCCATTCAATGAGCCAC 397 325 652 Antisense
GAGCCACGTGTAAAACGACTTTGGA 48 367 670 Antisense
AACGACTTTGGAAGTTGGCTCAAGA 96 143 683 Antisense
GAAAAATTGACGCCCCACGAGTTGA 269 353 712 Antisense
ACGCCCCACGAGTTGAGTGTTCTGA 420 89 721 Antisense
TAAGGTATTCTTTTTTGTTGCAAAT 151 637 795 Antisense
GCAAATTCCTGTCCTAAACGCGGTA 299 287 814 Antisense
GAGGAAGTATCTCGCCTTCAAGAAG 467 405 844 Antisense
Sequence Source Affymetrix Proprietary Database