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[193931_at] Sea urchin tektin A1 ; trans-acting transcriptional factor

Description R02E12.4 /REP_DB=WormBase Gene ID /WP=CE04781 /TR=Q21641 /GB=AAA96184.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Sea urchin tektin A1 ; trans-acting transcriptional factor
Cluster 6grp_total > 07      4grp_total > 55      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 171.5
(3)
P 		105.5
(-2.5)
A 		99.1
(-3)
A 		100.7
(-2.9)
A 		72
B 173.8
(3)
P 		102.3
(-0.9)
A 		110.6
(-0.4)
A 		63.8
(-3)
A 		110
C 168.3
(3)
P 		77.5
(-2)
A 		63.4
(-2.8)
A 		59.9
(-3)
A 		108
avr 171.2
(3) 		95.1
(-1.7) 		91
(-2) 		74.8
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 173
(3)
P 		110.4
(0.3)
P 		53.1
(-2.3)
A 		36.2
(-3)
A 		79.1
(-1.1)
A 		38.3
(-2.9)
A 		137
B 200.6
(3)
P 		96.9
(-0.8)
P 		84.6
(-1.2)
A 		35
(-3)
A 		50.2
(-2.4)
A 		73.8
(-1.6)
A 		166
C 142.7
(3)
P 		92.8
(0.7)
P 		12.8
(-3)
A 		80.7
(0.1)
A 		64.8
(-0.6)
A 		42.5
(-1.6)
A 		130
avr 172.1
(3) 		100
(-0.5) 		50.2
(-3) 		50.6
(-3) 		64.7
(-2.3) 		51.5
(-2.9) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 62.4
(3)
P 		22.9
(-2)
A 		25.9
(-1.6)
A 		14.7
(-3)
A 		48
B 55.4
(3)
P 		25.3
(-1.3)
A 		25.6
(-1.3)
A 		13.6
(-3)
A 		42
C 55.7
(3)
P 		22.3
(-1.4)
A 		22.1
(-1.4)
A 		10.1
(-3)
A 		46
avr 57.8
(3) 		23.5
(-1.6) 		24.5
(-1.4) 		12.8
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 31.9
(1.5)
P 		39.3
(3)
P 		11.6
(-2.5)
A 		9.2
(-3)
A 		23.9
(-0.1)
A 		9.3
(-3)
A 		30
B 69.8
(3)
P 		32.3
(-0.7)
P 		20.6
(-1.9)
A 		9.3
(-3)
A 		20.4
(-1.9)
A 		27.5
(-1.2)
A 		61
C 52.9
(3)
P 		28.3
(0)
P 		3.2
(-3)
A 		16.2
(-1.4)
A 		21
(-0.9)
A 		14.2
(-1.7)
A 		50
avr 51.5
(3) 		33.3
(0.3) 		11.8
(-3) 		11.6
(-3) 		21.8
(-1.5) 		17
(-2.2) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18308
Sequence Type Exemplar sequence
Representative Public ID R02E12.4 NCBI
Target Description R02E12.4 /REP_DB=WormBase Gene ID /WP=CE04781 /TR=Q21641 /GB=AAA96184.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Sea urchin tektin A1 ; trans-acting transcriptional factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076288 NCBI Caenorhabditis elegans R02E12.4 (R02E12.4) mRNA, complete cds. 11/11 None
SNAP00000023240 ENSEMBL cdna:SNAP chromosome:CEL140:X:4003509:4007611:1 11/11 None
GENEFINDER00000023250 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4003509:4007611:1 11/11 None
R02E12.4 ENSEMBL cdna:known chromosome:CEL140:X:4003509:4007611:1 gene:R02E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4003509-4007612(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sea urchin tektin A1 ; trans-acting transcriptional factor
Ensembl R02E12.4
Entrez Gene 187525 Entrez gene
SwissProt Q21641 EMBL-EBI
WormBase CE04781 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582415_AT tektin 1 cfa
CANINE_2:CFAAFFX.23535.1.S1_AT tektin 1 cfa
CANINE_2:CFAAFFX.23535.1.S1_S_AT tektin 1 cfa
DROSOPHILA_2:1628238_AT Tektin C dm
DROSGENOME1:148236_AT Tektin C dm
CHICKEN:GGA.12864.1.S1_AT tektin 1 gga
CHICKEN:GGA.12864.1.S1_S_AT tektin 1 gga
CHICKEN:GGA.6870.3.S1_AT tektin 1 gga
CHICKEN:GGAAFFX.3779.1.S1_AT tektin 1 gga
U133_X3P:HS.121764.0.A1_3P_AT tektin 1 hs
HG-U133_PLUS_2:239216_AT tektin 1 hs
HG-U133B:239216_AT tektin 1 hs
HG-U95E:81617_AT tektin 1 hs
HU35KSUBC:RC_T17287_AT Tektin 1 hs
HG-U95D:76576_AT Tektin 1 hs
MOUSE430A_2:1432075_A_AT tektin 1 mm
MOE430A:1432075_A_AT tektin 1 mm
MOUSE430_2:1432075_A_AT tektin 1 mm
MG-U74AV2:99545_AT tektin 1 mm
MU19KSUBA:TC24395_AT Tektin 1 (Tekt1), mRNA mm
RAE230A:1368250_AT tektin 1 rn
RAT230_2:1368250_AT tektin 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
226 microtubule cytoskeleton organization and biogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96184 Hypothetical protein R02E12.4 [Caenorhabditis elegans] ref|NP_508689.1| R02E12.4 [Caenorhabditis elegans] 0.0
blast CAE68511 Hypothetical protein CBG14325 [Caenorhabditis briggsae] 0.0
blast XP_791206 PREDICTED: similar to tektin 3 [Strongylocentrotus purpuratus] 7.0E-27
blast XP_791206 PREDICTED: similar to tektin 3 [Strongylocentrotus purpuratus] 1.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000435 EMBL-EBI Tektin 1.0E-126
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.2E-8
Pfam IPR000435 EMBL-EBI Tektin 1.0E-126
Pfam IPR000435 EMBL-EBI Tektin 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193931_AT
gtgaaatggcacatcagctgcgcactgaggcaatcgctgtcgaagcacttctgaaagatt
ctgtcagaaactggcaagaatggaaggacaatttgcattcacaggttaacggcaaggaca
aagaaatcaaaaacgccgatggagcaattgaggaaatttcattcagcttgcgacaaaaaa
gtggacctcttcaagttgcactttctcgtcagaaccaacgtggcttacgccctggaattg
agctgtgcaatgataaagctcaacatgcactccaccaagagctcatgatgcttaaaggaa
cttttttgagtctggaaaatcaacttgacaaggcaaaagaaagtaggaaaaagctggaca
atgatcgtgacaaacttcagcgcaagcttgacatctgtgatcacaacttgacaattgata
atgagattctccgacagattcgtacatcgtaccctcacgaaattcaactctctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAATGGCACATCAGCTGCGCAC 72 483 1424 Antisense
AGCTGCGCACTGAGGCAATCGCTGT 169 81 1439 Antisense
GCAATCGCTGTCGAAGCACTTCTGA 212 323 1453 Antisense
AGTGGACCTCTTCAAGTTGCACTTT 592 57 1603 Antisense
GTTGCACTTTCTCGTCAGAACCAAC 520 439 1618 Antisense
CAACGTGGCTTACGCCCTGGAATTG 408 147 1639 Antisense
GATAAAGCTCAACATGCACTCCACC 599 423 1675 Antisense
GCACTCCACCAAGAGCTCATGATGC 142 317 1690 Antisense
GCGCAAGCTTGACATCTGTGATCAC 211 289 1803 Antisense
GACAGATTCGTACATCGTACCCTCA 167 365 1856 Antisense
ACCCTCACGAAATTCAACTCTCTGG 95 91 1874 Antisense
Sequence Source Affymetrix Proprietary Database