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[193926_at] Cytidine and deoxycytidylate deaminases zinc-binding region

Description Y48A6B.7 /REP_DB=WormBase Gene ID /WP=CE19190 /TR=Q9XXD0 /GB=CAA19531.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Cytidine and deoxycytidylate deaminases zinc-binding region
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 30      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 41      6grp_total > 44      4grp_total > 44      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 966.8
(0.5)
P 		1192.1
(3)
P 		929.8
(0.1)
P 		645.6
(-3)
P 		547
B 1056.7
(3)
P 		1043.2
(2.7)
P 		994.1
(1.8)
P 		747.5
(-3)
P 		309
C 1041
(1.4)
P 		1147.8
(3)
P 		782.4
(-2.3)
P 		736.4
(-3)
P 		411
avr 1021.5
(1.5) 		1127.7
(3) 		902.1
(-0.2) 		709.8
(-3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 829.4
(0.7)
P 		809.8
(0.4)
P 		1030
(3)
P 		614.7
(-1.9)
P 		517.3
(-3)
P 		592.4
(-2.1)
P 		513
B 796.1
(-0.7)
P 		802
(-0.6)
P 		1173.8
(3)
P 		622.8
(-2.4)
P 		558
(-3)
P 		711.5
(-1.5)
P 		616
C 801.1
(3)
P 		743.9
(1.8)
P 		750.8
(1.9)
P 		514.5
(-3)
P 		604.1
(-1.1)
P 		788.1
(2.7)
P 		287
avr 808.9
(0.5) 		785.2
(0.2) 		984.9
(3) 		584
(-2.7) 		559.8
(-3) 		697.3
(-1.1) 		425
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 352
(3)
P 		258.8
(0.8)
P 		243.1
(0.5)
P 		94.5
(-3)
P 		258
B 337
(3)
P 		257.6
(0.3)
P 		230.4
(-0.6)
P 		159.3
(-3)
P 		178
C 344.6
(3)
P 		330
(2.6)
P 		272.7
(1)
P 		124.2
(-3)
P 		220
avr 344.5
(3) 		282.1
(1.3) 		248.7
(0.4) 		126
(-3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 152.9
(-2.6)
P 		288
(3)
P 		224.3
(0.3)
P 		155.9
(-2.5)
P 		156.1
(-2.5)
P 		144.2
(-3)
P 		144
B 277
(2.6)
P 		266.9
(2.1)
P 		285
(3)
P 		165
(-3)
P 		226.7
(0.1)
P 		265.3
(2)
P 		120
C 296.9
(3)
P 		227
(0.8)
P 		191.1
(-0.3)
P 		103.5
(-3)
P 		195.5
(-0.1)
P 		263.8
(2)
P 		193
avr 242.3
(2.1) 		260.6
(3) 		233.5
(1.6) 		141.5
(-3) 		192.8
(-0.4) 		224.4
(1.2) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7736
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.7 NCBI
Target Description Y48A6B.7 /REP_DB=WormBase Gene ID /WP=CE19190 /TR=Q9XXD0 /GB=CAA19531.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Cytidine and deoxycytidylate deaminases zinc-binding region
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067017 NCBI Caenorhabditis elegans Y48A6B.7 (Y48A6B.7) mRNA, complete cds. 11/11 A 
SNAP00000033008 ENSEMBL cdna:SNAP chromosome:CEL140:III:11025165:11026418:-1 11/11 None
GENEFINDER00000033019 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11025165:11026418:-1 11/11 None
Y48A6B.7 ENSEMBL cdna:known chromosome:CEL140:III:11025116:11026443:-1 gene:Y48A6B.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11025160-11026414(-) 100.0 100.0
Public Domain and Genome References
Gene Title Cytidine and deoxycytidylate deaminases zinc-binding region
Ensembl Y48A6B.7
Entrez Gene 176533 Entrez gene
SwissProt Q9XXD0 EMBL-EBI
WormBase CE19190 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19531 Hypothetical protein Y48A6B.7 [Caenorhabditis elegans] ref|NP_499418.1| Y48A6B.7 [Caenorhabditis elegans] 1.0E-89
blast CAA19531 Hypothetical protein Y48A6B.7 [Caenorhabditis elegans] ref|NP_499418.1| Y48A6B.7 [Caenorhabditis elegans] 1.0E-85
blast CAE71327 Hypothetical protein CBG18226 [Caenorhabditis briggsae] 3.0E-81
blast CAE71327 Hypothetical protein CBG18226 [Caenorhabditis briggsae] 3.0E-77
blast CAE64443 Hypothetical protein CBG09150 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002125 EMBL-EBI Cytidine/deoxycytidylate deaminase, zinc-binding region 1.7E-28
Pfam IPR002125 EMBL-EBI Cytidine/deoxycytidylate deaminase, zinc-binding region 5.9E-16
Pfam IPR002125 EMBL-EBI Cytidine/deoxycytidylate deaminase, zinc-binding region 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:193926_AT
tcacgctgagcacatggccgaagctgtcgcagaagcttgtcgaggtgtcgagtgtggaga
tggtggaccattcggtgcggttgtagttgattcaaacgggaaagtggtcgcaaaaggcca
caatatggtgctggtcaccaaggatccgacaatgcacgccgagatgactgctattaagaa
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACGCTGAGCACATGGCCGAAGCT 65 625 51 Antisense
ACATGGCCGAAGCTGTCGCAGAAGC 305 105 62 Antisense
GTCGCAGAAGCTTGTCGAGGTGTCG 382 475 76 Antisense
GAGGTGTCGAGTGTGGAGATGGTGG 247 403 92 Antisense
AGATGGTGGACCATTCGGTGCGGTT 384 67 108 Antisense
ATTCGGTGCGGTTGTAGTTGATTCA 358 9 120 Antisense
GAAAGTGGTCGCAAAAGGCCACAAT 218 361 150 Antisense
AGGCCACAATATGGTGCTGGTCACC 607 53 165 Antisense
GCTGGTCACCAAGGATCCGACAATG 107 287 180 Antisense
TCCGACAATGCACGCCGAGATGACT 145 595 195 Antisense
GCCGAGATGACTGCTATTAAGAATG 249 283 208 Antisense
Sequence Source Affymetrix Proprietary Database