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[193922_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)

Description F38C2.5 /REP_DB=WormBase Gene ID /WP=CE16004 /TR=O45491 /GB=CAB05191.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster 6grp_total > 57      4grp_total > 10      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 3
(-3)
A 		15.7
(-1)
A 		9.7
(-1.9)
A 		40.7
(3)
A 		38
B 7.4
(-2.6)
A 		20.4
(-0.8)
A 		4.4
(-3)
A 		48.5
(3)
A 		44
C 12.2
(-2.9)
A 		11.1
(-3)
A 		12.1
(-3)
A 		137.2
(3)
P 		126
avr 7.5
(-3) 		15.7
(-2.3) 		8.7
(-2.9) 		75.5
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 18.1
(-1)
A 		3.4
(-3)
A 		14.7
(-1.4)
A 		8.2
(-2.3)
A 		5.3
(-2.7)
A 		46.6
(3)
A 		43
B 20.4
(2.7)
A 		3.9
(-3)
A 		9.6
(-1)
A 		21
(2.9)
A 		9.3
(-1.1)
A 		21.2
(3)
A 		17
C 12
(-2.2)
A 		33.4
(0.6)
A 		11.9
(-2.2)
A 		5.8
(-3)
A 		9.4
(-2.5)
A 		51.3
(3)
A 		46
avr 16.8
(-1.3) 		13.6
(-1.9) 		12.1
(-2.2) 		11.7
(-2.3) 		8
(-3) 		39.7
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.1
(-3)
A 		3.4
(-0.2)
A 		2.5
(-1.3)
A 		6
(3)
A 		5
B 2.4
(-2.1)
A 		5
(-0.4)
A 		1
(-3)
A 		10.3
(3)
A 		9
C 4
(-2.8)
A 		3.2
(-3)
A 		4.2
(-2.7)
A 		23.1
(3)
P 		20
avr 2.5
(-3) 		3.9
(-2.2) 		2.6
(-2.9) 		13.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.3
(-1.8)
A 		1.2
(-3)
A 		3.2
(-1.8)
A 		2.1
(-2.5)
A 		1.6
(-2.8)
A 		11.4
(3)
A 		10
B 7.1
(2.3)
A 		1.3
(-3)
A 		2.3
(-2.1)
A 		5.5
(0.8)
A 		3.8
(-0.7)
A 		7.9
(3)
A 		7
C 4.5
(-1.8)
A 		10.2
(0.4)
A 		3
(-2.3)
A 		1.2
(-3)
A 		3.1
(-2.3)
A 		17.2
(3)
A 		16
avr 5
(-1.6) 		4.2
(-2.1) 		2.8
(-3) 		2.9
(-2.9) 		2.8
(-3) 		12.2
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8542
Sequence Type Exemplar sequence
Representative Public ID F38C2.5 NCBI
Target Description F38C2.5 /REP_DB=WormBase Gene ID /WP=CE16004 /TR=O45491 /GB=CAB05191.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070530 NCBI Caenorhabditis elegans F38C2.5 (F38C2.5) mRNA, complete cds. 11/11 None
SNAP00000039189 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16278175:16278784:1 11/11 None
GENEFINDER00000039194 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16278175:16278784:1 11/11 None
F38C2.5 ENSEMBL cdna:known chromosome:CEL140:IV:16278174:16278979:1 gene:F38C2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16278180-16278790(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Ensembl F38C2.5
Entrez Gene 178454 Entrez gene
SwissProt O45491 EMBL-EBI
WormBase CE16004 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05191 Hypothetical protein F38C2.5 [Caenorhabditis elegans] ref|NP_502931.1| F38C2.5 [Caenorhabditis elegans] 1.0E-105
blast CAB16528 Hypothetical protein Y57G11C.25 [Caenorhabditis elegans] ref|NP_502805.1| Y57G11C.25 [Caenorhabditis elegans] 7.0E-70
blast AAB37036 Posterior segregation protein 1 [Caenorhabditis elegans] ref|NP_505172.1| POsterior Segregation family member (pos-1) [Caenorhabditis elegans] dbj|BAA33854.1| cytoplasmic zinc-finger protein [Caenorhabditis elegans] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 4.6E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.1E-13
Sequence
Target Sequence 
>C. ELEGANS:193922_AT
tgacgtcccaacttttaccaaattgcacaatgttgctcagtggctctctcagcagccacc
ttctccaagactgtttgatcagaaagaaaatggcttctcgcagaattttcaaccattctt
gaagacagtaaactcatgcacaattcctgacgatctccacgaagaaatgatgcgattgaa
aagaaaagaaaatgcattcaaaactgctctttgcaagacgtttcagctcacacgagcatg
ctcatacggggagcagtgcaaatttgctcacagtgtcgaggagctgcagctgaaacagaa
gaaccgtggagtcaaccacccaaagtataagacagttctctgtgacaatttctctagaac
tggacactgcaaatatgggacaaaatgtcagtttattcacagagctgttgagccaactcc
agctcaaaatccactgatgccccagttttcttcatggtttgctccttcatcgggtctttc
tcgggagtttcttgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTCCCAACTTTTACCAAATTG 81 379 33 Antisense
CACAATGTTGCTCAGTGGCTCTCTC 7 195 58 Antisense
ACCTTCTCCAAGACTGTTTGATCAG 441 87 90 Antisense
GCTTCTCGCAGAATTTTCAACCATT 92 307 125 Antisense
GACAGTAAACTCATGCACAATTCCT 121 369 156 Antisense
CACAGTGTCGAGGAGCTGCAGCTGA 71 197 301 Antisense
AGACAGTTCTCTGTGACAATTTCTC 19 73 362 Antisense
CCAACTCCAGCTCAAAATCCACTGA 330 277 445 Antisense
AAAATCCACTGATGCCCCAGTTTTC 312 127 458 Antisense
GCCCCAGTTTTCTTCATGGTTTGCT 175 283 471 Antisense
GGTCTTTCTCGGGAGTTTCTTGACA 535 503 505 Antisense
Sequence Source Affymetrix Proprietary Database