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[193915_s_at] ATPases associated with various cellular activities (AAA)

Description F54B3.3 /REP_DB=WormBase Gene ID /WP=CE03405 /TR=Q20748 /GB=CAA88471.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATPases associated with various cellular activities (AAA)
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 51      6grp_total > 35      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 779
1 2 3 4 range
A 620.7
(0.2)
P 		907.4
(2.8)
P 		933.6
(3)
P 		259.9
(-3)
P 		674
B 679.3
(0.4)
P 		893.8
(2.1)
P 		999.8
(3)
P 		252
(-3)
P 		748
C 718
(0.5)
P 		938.8
(2.3)
P 		1030.8
(3)
P 		274.4
(-3)
P 		756
avr 672.7
(0.4) 		913.3
(2.4) 		988.1
(3) 		262.1
(-3) 		726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 456
1 2 3 4 5 6 range
A 657.1
(3)
P 		626.5
(2.3)
P 		647.8
(2.8)
P 		435.8
(-2)
P 		390.1
(-3)
P 		394.4
(-2.9)
P 		267
B 722.3
(2.9)
P 		730.3
(3)
P 		684.5
(2.2)
P 		579
(0.4)
P 		380.1
(-3)
P 		511.8
(-0.7)
P 		350
C 618.1
(-0)
P 		835.8
(3)
P 		532.8
(-1.2)
P 		556
(-0.9)
P 		403.8
(-3)
P 		537
(-1.2)
P 		432
avr 665.8
(1.8) 		730.9
(3) 		621.7
(1.1) 		523.6
(-0.7) 		391.3
(-3) 		481.1
(-1.4) 		340
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 226
(2.5)
P 		197
(1.6)
P 		244.1
(3)
P 		38
(-3)
P 		206
B 216.6
(2.5)
P 		220.7
(2.6)
P 		231.7
(3)
P 		53.7
(-3)
P 		178
C 237.7
(0.7)
P 		269.9
(1.3)
P 		359.3
(3)
P 		46.3
(-3)
P 		313
avr 226.8
(1.7) 		229.2
(1.7) 		278.4
(3) 		46
(-3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 121.1
(-1.8)
P 		222.8
(3)
P 		141.1
(-0.9)
P 		110.5
(-2.3)
P 		117.7
(-2)
P 		96
(-3)
P 		127
B 251.3
(3)
P 		243.1
(2.5)
P 		166.2
(-2.2)
P 		153.4
(-3)
P 		154.4
(-2.9)
P 		190.9
(-0.7)
P 		98
C 229.1
(1.9)
P 		255
(3)
P 		135.6
(-2)
P 		111.8
(-3)
P 		130.7
(-2.2)
P 		179.8
(-0.2)
P 		143
avr 200.5
(0.9) 		240.3
(3) 		147.6
(-1.8) 		125.2
(-3) 		134.3
(-2.5) 		155.6
(-1.4) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193915_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3073
Sequence Type Exemplar sequence
Representative Public ID F54B3.3 NCBI
Target Description F54B3.3 /REP_DB=WormBase Gene ID /WP=CE03405 /TR=Q20748 /GB=CAA88471.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATPases associated with various cellular activities (AAA)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063809 NCBI Caenorhabditis elegans F54B3.3 (F54B3.3) mRNA, complete cds. 11/11 None
SNAP00000006965 ENSEMBL cdna:SNAP chromosome:CEL140:II:10248901:10250781:1 11/11 None
GENEFINDER00000006970 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10248901:10250781:1 11/11 None
F54B3.3.3 ENSEMBL cdna:known chromosome:CEL140:II:10248899:10251073:1 gene:F54B3.3 11/11 None
F54B3.3.2 ENSEMBL cdna:known chromosome:CEL140:II:10248901:10251073:1 gene:F54B3.3 11/11 None
F54B3.3.1 ENSEMBL cdna:known chromosome:CEL140:II:10248901:10251053:1 gene:F54B3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10248670-10250778(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATPases associated with various cellular activities (AAA)
Ensembl F54B3.3
Entrez Gene 174590 Entrez gene
SwissProt Q20748 EMBL-EBI
WormBase CE35878 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265340_AT AAA-type ATPase family protein at
ATGENOME1:18374_AT AAA-type ATPase family protein at
CANINE_2:CFAAFFX.29389.1.S1_S_AT similar to AAA-ATPase TOB3 cfa
DROSOPHILA_2:1628099_AT belphegor dm
DROSGENOME1:154554_AT belphegor dm
CHICKEN:GGA.19048.1.S1_AT similar to ATAD3A protein gga
MOUSE430A_2:1437343_X_AT ATPase family, AAA domain containing 3A mm
MOE430A:1437343_X_AT ATPase family, AAA domain containing 3A mm
MOUSE430_2:1437343_X_AT ATPase family, AAA domain containing 3A mm
MOUSE430A_2:1438178_X_AT ATPase family, AAA domain containing 3A mm
MOE430A:1438178_X_AT ATPase family, AAA domain containing 3A mm
MOUSE430_2:1438178_X_AT ATPase family, AAA domain containing 3A mm
MG-U74AV2:162418_R_AT ATPase family, AAA domain containing 3A mm
MG-U74AV2:161322_R_AT ATPase family, AAA domain containing 3A mm
MOE430A:1422461_AT ATPase family, AAA domain containing 3A mm
MOUSE430A_2:1422461_AT ATPase family, AAA domain containing 3A mm
MOUSE430_2:1422461_AT ATPase family, AAA domain containing 3A mm
MOE430A:1456541_X_AT ATPase family, AAA domain containing 3A mm
MOUSE430A_2:1456541_X_AT ATPase family, AAA domain containing 3A mm
MOUSE430_2:1456541_X_AT ATPase family, AAA domain containing 3A mm
MG-U74AV2:104103_AT Premature mRNA for mKIAA1273 protein mm
MU19KSUBA:TC21125_AT Premature mRNA for mKIAA1273 protein mm
MU11KSUBA:D18554_RC_AT Premature mRNA for mKIAA1273 protein mm
RG-U34C:RC_AI103458_AT ATPase family, AAA domain containing 3A (predicted) rn
RAE230A:1371980_AT ATPase family, AAA domain containing 3A (predicted) rn
RAT230_2:1371980_AT ATPase family, AAA domain containing 3A (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88471 Hypothetical protein F54B3.3 [Caenorhabditis elegans] ref|NP_496210.2| F54B3.3 [Caenorhabditis elegans] 0.0
blast CAE71743 Hypothetical protein CBG18727 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.0E-44
Sequence
Target Sequence 
>C. ELEGANS:193915_S_AT
tgaagacacacgtgcagctctcaacgctttcctcttcagaactggagagcagtcgagaaa
gttcatgcttgtcgtggcttctaatcagccagagcagttcgattgggcagttaacgatcg
tttcgatcagcttgtcgaattcacactgccaggaatggaagaacgtgaacgaattcttct
gcaatacttcaacgagcacatcgtcactccagcaactagtggatctcgttctcaacgact
gaaactcgataactttgattgggttgctaagtgtaatgaagttgccaaaaagacatctgg
aatgagtggaagagaattgagtaaacttgtcatcggatggcaagcttctgcatatgcatc
tgaaaccggagtgctcaccgaggctatcgttgatcgtaatactgctgacgcaatggttca
acat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGACACACGTGCAGCTCTCAAC 367 575 1326 Antisense
ACGCTTTCCTCTTCAGAACTGGAGA 659 91 1349 Antisense
GAAAGTTCATGCTTGTCGTGGCTTC 253 361 1382 Antisense
CAGCCAGAGCAGTTCGATTGGGCAG 301 203 1411 Antisense
TCAGCTTGTCGAATTCACACTGCCA 423 625 1452 Antisense
GAACGAATTCTTCTGCAATACTTCA 453 331 1492 Antisense
ACTTCAACGAGCACATCGTCACTCC 154 103 1511 Antisense
AGCAACTAGTGGATCTCGTTCTCAA 152 75 1536 Antisense
GTCATCGGATGGCAAGCTTCTGCAT 631 467 1654 Antisense
TGAAACCGGAGTGCTCACCGAGGCT 361 573 1686 Antisense
TACTGCTGACGCAATGGTTCAACAT 516 645 1725 Antisense
Sequence Source Affymetrix Proprietary Database