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[193913_s_at]

Description T25C12.1A /REP_DB=WormBase Gene ID /WP=CE03733 /GEN=lin-14 /TR=SW:Q21446 /GB=CAA91484.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=embryonic nuclear protein lin-14 form B2
Cluster 6grp_total > 34      4grp_total > 15      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 39.6
(1)
A 		4.2
(-3)
A 		4.6
(-3)
A 		57.6
(3)
A 		53
B 70.1
(3)
A 		7.8
(-3)
A 		30.3
(-0.8)
A 		14.6
(-2.3)
A 		62
C 71.1
(-0)
A 		34.2
(-3)
A 		42.1
(-2.4)
A 		109
(3)
P 		75
avr 60.3
(3) 		15.4
(-3) 		25.7
(-1.6) 		60.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 9.8
(-1.5)
A 		15.5
(-0.3)
A 		31.5
(3)
A 		4.8
(-2.6)
A 		2.8
(-3)
A 		3.8
(-2.8)
A 		29
B 42.1
(3)
A 		6.2
(-2.4)
A 		18.6
(-0.5)
A 		3.1
(-2.8)
A 		1.9
(-3)
A 		27.7
(0.9)
A 		40
C 15.9
(-0.6)
A 		35.8
(3)
A 		14.7
(-0.8)
A 		5.7
(-2.4)
A 		3.4
(-2.8)
A 		2.2
(-3)
A 		34
avr 22.6
(3) 		19.2
(2) 		21.6
(2.7) 		4.5
(-2.5) 		2.7
(-3) 		11.2
(-0.4) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 14.4
(3)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		8.4
(0.3)
A 		14
B 22.4
(3)
A 		1.9
(-3)
A 		7
(-1.5)
A 		3.1
(-2.6)
A 		21
C 23.5
(3)
A 		9.8
(-3)
A 		14.7
(-0.9)
A 		18.4
(0.8)
P 		14
avr 20.1
(3) 		4.2
(-3) 		7.6
(-1.7) 		10
(-0.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.8
(-2)
A 		5.5
(1.6)
A 		6.9
(3)
A 		1.2
(-2.6)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		6
B 14.7
(3)
A 		2.1
(-2.4)
A 		4.5
(-1.4)
A 		0.8
(-3)
A 		0.8
(-3)
A 		10.3
(1.1)
A 		14
C 5.9
(0.1)
A 		10.9
(3)
A 		3.7
(-1.2)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		0.7
(-3)
A 		10
avr 7.5
(3) 		6.2
(1.8) 		5
(0.7) 		1
(-2.9) 		0.9
(-3) 		4
(-0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193913_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16760
Sequence Type Exemplar sequence
Representative Public ID T25C12.1A NCBI
Target Description T25C12.1A /REP_DB=WormBase Gene ID /WP=CE03733 /GEN=lin-14 /TR=SW:Q21446 /GB=CAA91484.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=embryonic nuclear protein lin-14 form B2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077515(11), NM_077516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077515 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-14) (lin-14) mRNA, complete cds. 11/11 None
NM_077516 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-14) (lin-14) mRNA, complete cds. 11/11 None
GENEFINDER00000017732 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11480414:11484189:1 11/11 None
SNAP00000017725 ENSEMBL cdna:SNAP chromosome:CEL140:X:11482992:11484189:1 11/11 None
T25C12.1a ENSEMBL cdna:known chromosome:CEL140:X:11469407:11484189:1 gene:T25C12.1 11/11 None
T25C12.1b ENSEMBL cdna:known chromosome:CEL140:X:11480299:11484189:1 gene:T25C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11469406-11484189(+) 100.0 100.0
Public Domain and Genome References
Ensembl T25C12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA42792 LIN-14B2 [Caenorhabditis elegans] emb|CAA91484.1| Hypothetical protein T25C12.1a [Caenorhabditis elegans] ref|NP_509916.1| abnormal cell LINeage family member (lin-14) [Caenorhabditis elegans] 0.0
blast CAA42791 LIN-14B1 [Caenorhabditis elegans] sp|Q21446|LIN14_CAEEL Abnormal cell lineage protein 14 (Protein lin-14) 0.0
blast CAA42793 LIN-14A [Caenorhabditis elegans] emb|CAA91485.1| Hypothetical protein T25C12.1b [Caenorhabditis elegans] ref|NP_509917.1| abnormal cell LINeage family member (lin-14) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:193913_S_AT
aaagcgtgtctttggaccacgtctcatgtcacaaaccacagttgctggtctcaaccactc
gaactatgcaaatcttccaatcaaaggaatttgctatattcaacatgtctgtagaaaagt
cttatatgacaagtttgaaaacgaggaagacttttgggacaaattccgcgaggcaatgcg
caaattggcagccagatgtcgcagagttaggcatgccaaaaagacaaaacacaacagaga
agaggctcaggcagaaatgttaagcaaaagatatggagaagatatgccgttcaatttgaa
cggagctggtttgataaggcccaaagtggaaacagtatcgcctgaagctaacatcttgaa
tagcgatcaaataaagagccagcttgaaagtttatttgcacatattccaaaaactgagag
cgaaacgccactaattgaaataattcaacaaaacatcagtctcttcacccatcttatccg
aactaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGTGTCTTTGGACCACGTCTC 72 123 1035 Antisense
CACGTCTCATGTCACAAACCACAGT 364 199 1052 Antisense
AAACCACAGTTGCTGGTCTCAACCA 386 125 1067 Antisense
GTCTCAACCACTCGAACTATGCAAA 497 467 1082 Antisense
AATTCCGCGAGGCAATGCGCAAATT 231 177 1196 Antisense
AATTGGCAGCCAGATGTCGCAGAGT 544 179 1217 Antisense
GATGTCGCAGAGTTAGGCATGCCAA 374 409 1229 Antisense
GAACGGAGCTGGTTTGATAAGGCCC 427 347 1332 Antisense
GTATCGCCTGAAGCTAACATCTTGA 328 455 1369 Antisense
CAACAAAACATCAGTCTCTTCACCC 23 191 1480 Antisense
TTCACCCATCTTATCCGAACTAAAG 564 687 1498 Antisense
Sequence Source Affymetrix Proprietary Database