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[193912_s_at] retinablastoma-binding protein RBAP46 like

Description K07A1.11 /REP_DB=WormBase Gene ID /WP=CE11860 /GEN=rba-1 /TR=SW:P90917 /GB=CAB03172.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=retinablastoma-binding protein RBAP46 like
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 87      6grp_total > 77      4grp_total > 54      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 684
1 2 3 4 range
A 1244.9
(3)
P 		721.5
(-3)
P 		919.1
(-0.7)
P 		775.8
(-2.4)
P 		523
B 1298
(3)
P 		952.4
(-0)
P 		923.7
(-0.3)
P 		614.5
(-3)
P 		684
C 1220.7
(3)
P 		926.6
(-0.8)
P 		969.3
(-0.2)
P 		750.5
(-3)
P 		470
avr 1254.5
(3) 		866.8
(-1.3) 		937.4
(-0.5) 		713.6
(-3) 		541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 810
1 2 3 4 5 6 range
A 1159.3
(-0.8)
P 		983
(-3)
P 		1145
(-1)
P 		1112.3
(-1.4)
P 		1226.5
(0.1)
P 		1457.2
(3)
P 		474
B 1233.2
(-0.5)
P 		1028.5
(-3)
P 		1135.4
(-1.7)
P 		1160.2
(-1.4)
P 		1323.7
(0.6)
P 		1516.9
(3)
P 		488
C 1070.1
(-2.7)
P 		1070.6
(-2.7)
P 		1081.4
(-2.6)
P 		1219.9
(-1.5)
P 		1035.7
(-3)
P 		1793.4
(3)
P 		758
avr 1154.2
(-1.6) 		1027.4
(-3) 		1120.6
(-2) 		1164.1
(-1.5) 		1195.3
(-1.2) 		1589.2
(3) 		562
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 453.3
(3)
P 		156.6
(-2.2)
P 		240.3
(-0.8)
P 		113.6
(-3)
P 		340
B 413.9
(3)
P 		235.2
(-0.8)
P 		214
(-1.2)
P 		130.9
(-3)
P 		283
C 404.1
(3)
P 		266.4
(0)
P 		337.8
(1.6)
P 		126.5
(-3)
P 		278
avr 423.8
(3) 		219.4
(-1.1) 		264
(-0.2) 		123.7
(-3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 213.7
(-3)
P 		349.6
(2.2)
P 		249.4
(-1.6)
P 		282.1
(-0.4)
P 		370.1
(3)
P 		354.8
(2.4)
P 		156
B 429.1
(0.2)
P 		342.4
(-1.6)
P 		275.7
(-3)
P 		307.3
(-2.3)
P 		537.8
(2.4)
P 		565.7
(3)
P 		290
C 396.6
(-0.4)
P 		326.7
(-1.6)
P 		275.2
(-2.5)
P 		245.3
(-3)
P 		335.1
(-1.5)
P 		600.4
(3)
P 		355
avr 346.5
(-1) 		339.6
(-1.2) 		266.8
(-3) 		278.2
(-2.7) 		414.3
(0.7) 		507
(3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193912_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.937
Sequence Type Exemplar sequence
Representative Public ID K07A1.11 NCBI
Target Description K07A1.11 /REP_DB=WormBase Gene ID /WP=CE11860 /GEN=rba-1 /TR=SW:P90917 /GB=CAB03172.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=retinablastoma-binding protein RBAP46 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060150 NCBI Caenorhabditis elegans RbAp48 related family member (rba-1) (rba-1) mRNA, complete cds. 11/11 None
GENEFINDER00000041874 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9624728:9626223:-1 11/11 None
SNAP00000041857 ENSEMBL cdna:SNAP chromosome:CEL140:I:9624799:9626223:-1 11/11 None
K07A1.11 ENSEMBL cdna:known chromosome:CEL140:I:9624647:9626229:-1 gene:K07A1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9624658-9626154(-) 100.0 100.0
Public Domain and Genome References
Gene Title retinablastoma-binding protein RBAP46 like
Gene Symbol rba-1
Ensembl K07A1.11
Entrez Gene 172801 Entrez gene
SwissProt P90917 EMBL-EBI
WormBase CE11860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03172 Hypothetical protein K07A1.11 [Caenorhabditis elegans] ref|NP_492551.1| RbAp48 related family member (rba-1) [Caenorhabditis elegans] sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1 0.0
blast CAE60159 Hypothetical protein CBG03711 [Caenorhabditis briggsae] 0.0
blast CAE60158 Hypothetical protein CBG03710 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.9E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0024
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.035
Sequence
Target Sequence 
>C. ELEGANS:193912_S_AT
gaccatttccggtcaaatagtgccacaaagcaagtttaaaggtcattcatcaaatgcgga
ggatgtttcttttcacgcgctccataatttcgtttttggatctgttggagatgatagaaa
actaaacctatgggatctgcgtcaatcaaagccacagctcacagccgtcggacatactgc
agaagttaattgtattactttcaatccgttttccgaatacattttagcaaccggatctgt
tgataaaacggttgctttgtgggatatgaggaatatgcgcaaaaaaatgtacacgctgaa
acatcacaacgacgaaatatttcaagtatcgttcagcccgcattatgaaactgttctggc
tagtagtggatcggatgatcgggttatcgtttgggatatttctaaaattcaagacccatc
gtcttcatcagctgcatcatctgattctgttccaccagaagttatttttattcacgctgg
gcatactggaaaagttgcagatttctcttggaatcccaaccgcccatggactatttgcag
cagcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCATTTCCGGTCAAATAGTGCCA 569 383 627 Antisense
GCGGAGGATGTTTCTTTTCACGCGC 201 293 682 Antisense
TTCACGCGCTCCATAATTTCGTTTT 395 687 698 Antisense
GGGATCTGCGTCAATCAAAGCCACA 481 495 758 Antisense
CTCACAGCCGTCGGACATACTGCAG 461 227 784 Antisense
ATATTTCAAGTATCGTTCAGCCCGC 161 15 943 Antisense
TTCAAGACCCATCGTCTTCATCAGC 591 683 1034 Antisense
GCTGCATCATCTGATTCTGTTCCAC 210 297 1057 Antisense
TTTTATTCACGCTGGGCATACTGGA 300 673 1092 Antisense
AGATTTCTCTTGGAATCCCAACCGC 568 65 1125 Antisense
GCCCATGGACTATTTGCAGCAGCGA 536 285 1148 Antisense
Sequence Source Affymetrix Proprietary Database