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[193911_at]

Description Y17G7B.15 /REP_DB=WormBase Gene ID /WP=CE25223 /CHR=2 /FEA=Sanger Annotation /DEF=PH (pleckstrin homology) domain, Ank repeat (2 domains) (HINXTON) TR:Q9XXH9 protein_id:CAA19462.2
Cluster 6grp_total > 78      4grp_total > 18      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 6.9
(-2.4)
A 		5.3
(-3)
A 		5.2
(-3)
A 		21.2
(3)
A 		16
B 20.8
(1.6)
A 		25.2
(3)
A 		14.3
(-0.4)
A 		5.9
(-3)
A 		19
C 3.5
(-3)
A 		19.5
(-1)
A 		9.9
(-2.2)
A 		50.9
(3)
A 		47
avr 10.4
(-2.8) 		16.7
(-0.4) 		9.8
(-3) 		26
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 18.6
(-0.4)
A 		5.8
(-2.7)
A 		33.8
(2.3)
A 		3.9
(-3)
A 		37.7
(3)
A 		19.2
(-0.3)
A 		34
B 10.7
(-2.6)
A 		13.7
(-2.1)
A 		8.3
(-3)
A 		9.7
(-2.8)
A 		23.3
(-0.5)
A 		44
(3)
A 		36
C 11.7
(-2)
A 		20.3
(-1)
A 		6.4
(-2.6)
A 		10.2
(-2.2)
A 		3.1
(-3)
A 		53.8
(3)
M 		51
avr 13.7
(-1.9) 		13.3
(-2) 		16.2
(-1.4) 		7.9
(-3) 		21.4
(-0.4) 		39
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(1.2)
A 		1.1
(-3)
A 		1.4
(-2.1)
A 		3.1
(3)
A 		2
B 6.6
(3)
A 		6.2
(2.5)
A 		3.3
(-0.7)
A 		1.3
(-3)
A 		5
C 1.2
(-3)
A 		5.6
(0.6)
A 		3.4
(-1.2)
A 		8.6
(3)
A 		7
avr 3.4
(-0.4) 		4.3
(3) 		2.7
(-3) 		4.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.4
(-1.6)
A 		2.1
(-2.4)
A 		7.4
(0.7)
A 		1
(-3)
A 		11.4
(3)
A 		4.7
(-0.9)
A 		10
B 3.7
(-2.3)
A 		4.6
(-1.9)
A 		2
(-3)
A 		2.6
(-2.8)
A 		9.5
(0.1)
A 		16.4
(3)
A 		14
C 4.3
(-1.8)
A 		6.2
(-1.2)
A 		1.6
(-2.8)
A 		2
(-2.6)
A 		1
(-3)
A 		18
(3)
M 		17
avr 3.8
(-2) 		4.3
(-1.7) 		3.7
(-2) 		1.9
(-3) 		7.3
(-0.1) 		13
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3978
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.15 NCBI
Target Description Y17G7B.15 /REP_DB=WormBase Gene ID /WP=CE25223 /CHR=2 /FEA=Sanger Annotation /DEF=PH (pleckstrin homology) domain, Ank repeat (2 domains) (HINXTON) TR:Q9XXH9 protein_id:CAA19462.2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027242(11), NM_001027241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027242 NCBI Caenorhabditis elegans CeNTaurin family member (cnt-1) (cnt-1) mRNA, complete cds. 11/11 None
NM_001027241 NCBI Caenorhabditis elegans CeNTaurin family member (cnt-1) (cnt-1) mRNA, complete cds. 11/11 None
SNAP00000030329 ENSEMBL cdna:SNAP chromosome:CEL140:II:12072205:12079978:-1 11/11 None
GENEFINDER00000030401 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12072205:12079978:-1 11/11 None
Y17G7B.15b ENSEMBL cdna:known chromosome:CEL140:II:12071973:12079979:-1 gene:Y17G7B.15 11/11 None
Y17G7B.15a ENSEMBL cdna:known chromosome:CEL140:II:12072205:12088764:-1 gene:Y17G7B.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12072201-12079975(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19462 Hypothetical protein Y17G7B.15b [Caenorhabditis elegans] ref|NP_001022413.1| CeNTaurin family member (cnt-1) [Caenorhabditis elegans] 0.0
blast CAA10735 centaurin beta 1B [Caenorhabditis elegans] 0.0
blast CAA19463 Hypothetical protein Y17G7B.15a [Caenorhabditis elegans] ref|NP_001022412.1| CeNTaurin family member (cnt-1) [Caenorhabditis elegans] 0.0
blast CAA10734 centaurin beta 1A [Caenorhabditis elegans] 0.0
blast CAE73543 Hypothetical protein CBG21011 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 3.2E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.92
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.6E-22
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 3.2E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.92
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.6E-22
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.92
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030401 2 571-593,675-692
Sequence
Target Sequence 
>C. ELEGANS:193911_AT
tctccgcttgtggttcagacacgaatctcgatgccatcggttcctcatcaattgacacaa
aaactgttgaatgggattccgtaaaagaagcatgtgaatgtggagatcttttggctctga
tgacagcttatgctcaaggatttgatctgaatgcactgcacaatggaaccactgcacttc
atattgccacaaggaatgggcaaactgctgcagtagagtttttattgctcaatggagcga
agattaatatgctcgatgagaagttgaatacgccattgcatttggctgcaaaggagggac
ataccttacccgtgtgccaacttctgaaacgtggtgctgacagtaacctagcaaatgtgg
acagcaagacaccgttggatatcgcaatggagtgcacacatgcagatattgttacgctat
tccgtgtgacaataatgcgaaacgacttcaacgcggacttcaacaacccgatggacgaaa
ccgtggaggcagtcatctcggatattgctcgccgagccgccacagagaaagagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCGCTTGTGGTTCAGACACGAA 388 609 1667 Antisense
CAGACACGAATCTCGATGCCATCGG 556 205 1682 Antisense
CATCGGTTCCTCATCAATTGACACA 334 211 1701 Antisense
TGGCTCTGATGACAGCTTATGCTCA 403 545 1778 Antisense
GAATGCACTGCACAATGGAACCACT 418 643 1815 Antisense
TGGAACCACTGCACTTCATATTGCC 385 547 1830 Antisense
TACCCGTGTGCCAACTTCTGAAACG 41 649 1973 Antisense
GAAACGACTTCAACGCGGACTTCAA 466 355 2105 Antisense
GCGGACTTCAACAACCCGATGGACG 403 293 2119 Antisense
GCAGTCATCTCGGATATTGCTCGCC 67 313 2155 Antisense
GCCGAGCCGCCACAGAGAAAGAGCA 156 285 2177 Antisense
Sequence Source Affymetrix Proprietary Database