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[193910_at] S. lavendulae subtilisin inhibitor-like protein-4 (SIL-4)

Description K09E3.1 /REP_DB=WormBase Gene ID /WP=CE04739 /TR=Q21400 /GB=AAA82377.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=S. lavendulae subtilisin inhibitor-like protein-4 (SIL-4)
Cluster 6grp_total > 83      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 5.9
(-3)
A 		11.2
(3)
A 		7.5
(-1.2)
A 		6.6
(-2.2)
A 		5
B 2.7
(-3)
A 		9
(-0.3)
A 		16.5
(3)
A 		3.6
(-2.6)
A 		14
C 6.5
(-3)
A 		9.3
(-2.7)
A 		8.1
(-2.8)
A 		55.9
(3)
A 		49
avr 5
(-3) 		9.8
(-1.3) 		10.7
(-1) 		22
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 6.1
(-2.2)
A 		8.8
(-1.7)
A 		30.7
(3)
A 		5.1
(-2.5)
A 		30.9
(3)
A 		2.5
(-3)
A 		28
B 4.7
(-3)
A 		7.2
(-0.9)
A 		6.6
(-1.4)
A 		11.8
(3)
A 		10.8
(2.2)
A 		5.4
(-2.4)
A 		7
C 8.1
(-2)
A 		11
(-0.2)
A 		11.3
(0)
A 		6.6
(-3)
A 		16
(3)
A 		7.2
(-2.6)
A 		9
avr 6.3
(-2.5) 		9
(-1.3) 		16.2
(1.7) 		7.8
(-1.8) 		19.2
(3) 		5
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(1.7)
A 		2.4
(3)
A 		2
(1.3)
A 		1
(-3)
A 		1
B 0.8
(-3)
A 		2.2
(-0.2)
A 		3.8
(3)
A 		0.8
(-3)
A 		3
C 2.2
(-3)
A 		2.7
(-2.6)
A 		2.8
(-2.5)
A 		9.4
(3)
A 		7
avr 1.7
(-3) 		2.4
(-0.9) 		2.9
(0.6) 		3.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		3.1
(-1.3)
A 		6.7
(1.2)
A 		1.3
(-2.5)
A 		9.3
(3)
A 		0.6
(-3)
A 		9
B 1.6
(-3)
A 		2.4
(-1.3)
A 		1.6
(-3)
A 		3.1
(0.2)
A 		4.4
(3)
A 		2
(-2.1)
A 		3
C 3
(-0.4)
A 		3.3
(0.1)
A 		2.9
(-0.5)
A 		1.3
(-3)
A 		5.2
(3)
A 		2.4
(-1.3)
A 		4
avr 1.9
(-2.7) 		2.9
(-1.4) 		3.7
(-0.4) 		1.9
(-2.7) 		6.3
(3) 		1.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17557
Sequence Type Exemplar sequence
Representative Public ID K09E3.1 NCBI
Target Description K09E3.1 /REP_DB=WormBase Gene ID /WP=CE04739 /TR=Q21400 /GB=AAA82377.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=S. lavendulae subtilisin inhibitor-like protein-4 (SIL-4)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078373 NCBI Caenorhabditis elegans K09E3.1 (K09E3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000022146 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17119206:17128916:1 10/11 None
SNAP00000022142 ENSEMBL cdna:SNAP chromosome:CEL140:X:17125590:17127725:1 11/11 None
K09E3.1 ENSEMBL cdna:known chromosome:CEL140:X:17125590:17127725:1 gene:K09E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title S. lavendulae subtilisin inhibitor-like protein-4 (SIL-4)
Ensembl K09E3.1
Entrez Gene 187218 Entrez gene
SwissProt Q21400 EMBL-EBI
WormBase CE04739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82377 Hypothetical protein K09E3.1 [Caenorhabditis elegans] ref|NP_510774.1| K09E3.1 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:193910_AT
tccgacgacaataaccatcaaccgcttactcctcaaccacgtaccgaaatccgatacatc
gaggtgaagaataatggtagtcacgacactcaaaacttattaaagtacctcggcaaatat
gatggcaaagcacgtgactgtatctctcgagaccacgtagcggctaaggcgcttgagaaa
accattgcgtcactcaaagtgccaggtcaaatcaatcacgccaacgccaccaaccagaat
caggggaacgggaaatctagcgatctgacagagaagccggtgtaccgaccagctgatcat
ccggatagttattatgacagtatcacaggggaaactttggcagggtattacgctccagga
aagacggggcctgtgctccgtctactccctagggcgttcccactgtacgaaggccccaca
tcggagcactgtcgtgtttgcaaagaaaaccatcaccctatgaggtgtacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGACGACAATAACCATCAACCGC 657 591 1495 Antisense
GGCGCTTGAGAAAACCATTGCGTCA 211 543 1662 Antisense
ATTGCGTCACTCAAAGTGCCAGGTC 443 5 1678 Antisense
GCCACCAACCAGAATCAGGGGAACG 318 277 1720 Antisense
GGAACGGGAAATCTAGCGATCTGAC 372 527 1739 Antisense
AGAGAAGCCGGTGTACCGACCAGCT 358 63 1764 Antisense
CGACCAGCTGATCATCCGGATAGTT 19 249 1780 Antisense
TTGGCAGGGTATTACGCTCCAGGAA 644 685 1831 Antisense
CAGGAAAGACGGGGCCTGTGCTCCG 208 207 1850 Antisense
CCCACATCGGAGCACTGTCGTGTTT 122 257 1909 Antisense
AACCATCACCCTATGAGGTGTACAC 632 147 1942 Antisense
Sequence Source Affymetrix Proprietary Database