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[193905_at]

Description Y52B11A.3 /REP_DB=WormBase Gene ID /WP=CE20292 /TR=Q9XWF1 /GB=CAA21721.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Heme-binding domain in cytochrome b5 and oxidoreductases
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 90      6grp_total > 39      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 182.9
(3)
P 		129.8
(-2.3)
P 		137
(-1.6)
P 		123.1
(-3)
P 		60
B 167.6
(0.2)
P 		141.1
(-1.5)
P 		116.9
(-3)
P 		213.2
(3)
P 		96
C 196.5
(3)
P 		118.1
(-3)
P 		155.6
(-0.1)
P 		145.5
(-0.9)
P 		78
avr 182.3
(3) 		129.7
(-3) 		136.5
(-2.2) 		160.6
(0.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 146.4
(0.3)
P 		111.5
(-3)
P 		125.1
(-1.7)
P 		113.9
(-2.8)
P 		174.3
(3)
P 		138
(-0.5)
P 		63
B 169.5
(0.5)
P 		154.5
(-0.7)
P 		124.3
(-3)
P 		133.6
(-2.3)
P 		202.1
(3)
P 		194.7
(2.4)
P 		78
C 193.4
(3)
P 		148.4
(0.5)
P 		138.3
(-0)
P 		84
(-3)
P 		182.2
(2.4)
P 		140.6
(0.1)
P 		109
avr 169.8
(1.7) 		138.1
(-0.8) 		129.2
(-1.5) 		110.5
(-3) 		186.2
(3) 		157.8
(0.7) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 66.6
(3)
P 		28.2
(-1.7)
P 		35.8
(-0.8)
P 		18
(-3)
P 		49
B 53.4
(3)
P 		34.9
(-1.2)
P 		27.1
(-3)
P 		45.4
(1.2)
P 		26
C 65
(3)
P 		34
(-1.6)
P 		54.2
(1.4)
P 		24.5
(-3)
P 		41
avr 61.7
(3) 		32.4
(-2.4) 		39
(-1.2) 		29.3
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 27
(-3)
P 		39.7
(-0)
P 		27.2
(-3)
P 		28.9
(-2.6)
P 		52.6
(3)
P 		33.6
(-1.5)
P 		26
B 59
(0.3)
P 		51.4
(-0.5)
P 		30.2
(-3)
P 		35.4
(-2.4)
P 		82.1
(3)
P 		72.6
(1.9)
P 		52
C 71.7
(3)
P 		45.3
(0.1)
P 		35.2
(-1)
P 		16.9
(-3)
P 		59
(1.6)
P 		47.1
(0.3)
P 		55
avr 52.6
(1.1) 		45.5
(-0.1) 		30.9
(-2.4) 		27.1
(-3) 		64.6
(3) 		51.1
(0.8) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193905_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1052
Sequence Type Exemplar sequence
Representative Public ID Y52B11A.3 NCBI
Target Description Y52B11A.3 /REP_DB=WormBase Gene ID /WP=CE20292 /TR=Q9XWF1 /GB=CAA21721.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Heme-binding domain in cytochrome b5 and oxidoreductases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026613(11), NM_001026614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026613 NCBI Caenorhabditis elegans Y52B11A.3a (Y52B11A.3) mRNA, complete cds. 11/11 None
NM_001026614 NCBI Caenorhabditis elegans Y52B11A.3b (Y52B11A.3) mRNA, complete cds. 11/11 None
Y52B11A.3a ENSEMBL cdna:known chromosome:CEL140:I:10978618:10987854:1 gene:Y52B11A.3 11/11 None
Y52B11A.3b ENSEMBL cdna:known chromosome:CEL140:I:10980193:10987728:1 gene:Y52B11A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015588 4/11 Cross Hyb Matching Probes None
GENEFINDER00000015609 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10978553-10987659(+) 99.94 100.0
Public Domain and Genome References
Ensembl Y52B11A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21721 Hypothetical protein Y52B11A.3a [Caenorhabditis elegans] ref|NP_001021784.1| Y52B11A.3a [Caenorhabditis elegans] 0.0
blast CAD91715 Hypothetical protein Y52B11A.3b [Caenorhabditis elegans] ref|NP_001021785.1| Y52B11A.3b [Caenorhabditis elegans] 0.0
blast CAE63528 Hypothetical protein CBG08008 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008333 EMBL-EBI Oxidoreductase FAD-binding region 3.1E-6
Pfam IPR008333 EMBL-EBI Oxidoreductase FAD-binding region 7.8E-8
Pfam IPR001199 EMBL-EBI Cytochrome b5 2.6E-18
Pfam IPR008333 EMBL-EBI Oxidoreductase FAD-binding region 3.1E-6
Pfam IPR008333 EMBL-EBI Oxidoreductase FAD-binding region 7.8E-8
Pfam IPR001199 EMBL-EBI Cytochrome b5 2.6E-18
Sequence
Target Sequence 
>C. ELEGANS:193905_AT
gaacggaatatgtactccatcactggaaaatctgaaaatcggcggcgaattggagatcag
tgacccaattggtgaacgaaatttcgctgaatggacggaaaatgctcaggaattgatact
tttggctgcgggaagtggaattacaccgatgattgatattatggagaaaagaatccaaaa
aactgaaaattctaattcaaaagtgtactttttgatgtttaataagactgaaaatgatct
acaaactggaaaacccgaagagaatccgaaatccacgtggaaaatggccgatttctattc
aaaataccgcggagacgagcggattgtgatgaaaaacgtgctttccgcatcagaatgtcc
tgttgaaactggagaatatttcaatggaagagtatctacagacctcttgaattccataat
ttccacgtcatcaacagcatcgagaagagcattcatttgtggtcctgatgggttcatttt
ggcggcgaaaaccgccctggaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGGAATATGTACTCCATCACTG 313 349 1092 Antisense
GCGGCGAATTGGAGATCAGTGACCC 575 293 1133 Antisense
ACCCGAAGAGAATCCGAAATCCACG 639 35 1344 Antisense
GGCCGATTTCTATTCAAAATACCGC 508 541 1377 Antisense
GAAAAACGTGCTTTCCGCATCAGAA 151 355 1422 Antisense
GTATCTACAGACCTCTTGAATTCCA 640 453 1483 Antisense
GAATTCCATAATTTCCACGTCATCA 85 325 1500 Antisense
TTCCACGTCATCAACAGCATCGAGA 162 701 1512 Antisense
AGAAGAGCATTCATTTGTGGTCCTG 243 75 1534 Antisense
GTCCTGATGGGTTCATTTTGGCGGC 113 477 1553 Antisense
TGGCGGCGAAAACCGCCCTGGAATC 709 531 1571 Antisense
Sequence Source Affymetrix Proprietary Database