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[193900_at] ATPases associated with various cellular activities (AAA)

Description Y75B8A.4 /REP_DB=WormBase Gene ID /WP=CE23016 /TR=Q9XW87 /GB=CAA22082.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATPases associated with various cellular activities (AAA)
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 67      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 95      6grp_total > 58      4grp_total > 40      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 513.7
(-3)
P 		519
(-2.9)
P 		921.5
(3)
P 		582.7
(-2)
P 		408
B 505.2
(-2.7)
P 		479.3
(-3)
P 		961.3
(3)
P 		542.2
(-2.2)
P 		482
C 494.8
(-2.9)
P 		484.6
(-3)
P 		975.4
(3)
P 		590.3
(-1.7)
P 		491
avr 504.6
(-2.9) 		494.3
(-3) 		952.7
(3) 		571.7
(-2) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1062
1 2 3 4 5 6 range
A 845.7
(-0.9)
P 		551.7
(-2.6)
P 		551.8
(-2.6)
P 		779.6
(-1.3)
P 		483.5
(-3)
P 		1533.8
(3)
P 		1050
B 748.3
(0.8)
P 		472.2
(-3)
P 		493.8
(-2.7)
P 		579.4
(-1.5)
P 		601.4
(-1.2)
P 		903.8
(3)
P 		432
C 755
(-1.1)
P 		502.2
(-3)
P 		551.9
(-2.6)
P 		676.7
(-1.7)
P 		518.4
(-2.9)
P 		1306
(3)
P 		804
avr 783
(-0.8) 		508.7
(-3) 		532.5
(-2.8) 		678.6
(-1.6) 		534.4
(-2.8) 		1247.9
(3) 		739
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 187
(0.9)
P 		112.7
(-1.9)
P 		240.9
(3)
P 		85.3
(-3)
P 		156
B 161.1
(-0.4)
P 		118.4
(-2.8)
P 		222.7
(3)
P 		115.5
(-3)
P 		107
C 163.8
(-1.4)
P 		139.3
(-2)
P 		340
(3)
P 		99.5
(-3)
P 		241
avr 170.6
(-0.5) 		123.5
(-2.2) 		267.9
(3) 		100.1
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 155.9
(-2.2)
P 		196.2
(-1.2)
P 		120.2
(-3)
P 		197.7
(-1.2)
P 		145.9
(-2.4)
P 		373.4
(3)
P 		253
B 260.4
(0.9)
P 		157.2
(-2)
P 		119.9
(-3)
P 		153.5
(-2.1)
P 		244.4
(0.4)
P 		337
(3)
P 		217
C 279.9
(-0.1)
P 		153.2
(-2.7)
P 		140.5
(-2.9)
P 		136.1
(-3)
P 		167.7
(-2.4)
P 		437.2
(3)
P 		301
avr 232.1
(-0.5) 		168.9
(-2) 		126.9
(-3) 		162.4
(-2.2) 		186
(-1.6) 		382.5
(3) 		256
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6657
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.4 NCBI
Target Description Y75B8A.4 /REP_DB=WormBase Gene ID /WP=CE23016 /TR=Q9XW87 /GB=CAA22082.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ATPases associated with various cellular activities (AAA)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067176 NCBI Caenorhabditis elegans Y75B8A.4 (Y75B8A.4) mRNA, complete cds. 11/11 None
SNAP00000020067 ENSEMBL cdna:SNAP chromosome:CEL140:III:12100269:12113315:1 11/11 None
GENEFINDER00000020172 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12107660:12113315:1 11/11 None
Y75B8A.4.2 ENSEMBL cdna:known chromosome:CEL140:III:12107640:12113315:1 gene:Y75B8A.4 11/11 None
Y75B8A.4.1 ENSEMBL cdna:known chromosome:CEL140:III:12107649:12113346:1 gene:Y75B8A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12107655-12113311(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATPases associated with various cellular activities (AAA)
Ensembl Y75B8A.4
Entrez Gene 176643 Entrez gene
SwissProt Q9XW87 EMBL-EBI
WormBase CE23016 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
6510 ATP-dependent proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
4176 ATP-dependent peptidase activity inferred from electronic annotation QuickGO AmiGO
4252 serine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22082 Hypothetical protein Y75B8A.4 [Caenorhabditis elegans] ref|NP_499577.1| Y75B8A.4 [Caenorhabditis elegans] 0.0
blast CAE75110 Hypothetical protein CBG23035 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008269 EMBL-EBI Peptidase S16, lon C-terminal 2.6E-53
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 4.0E-48
Pfam IPR008269 EMBL-EBI Peptidase S16, lon C-terminal 1.1E-59
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 4.0E-48
Sequence
Target Sequence 
>C. ELEGANS:193900_AT
gaggccattaccagcgggagtatgctttggattgagtgtcacgacgattggaggaagggt
tatgccaattgaagcatcaaaatccaaaggaaccggtaaaatagtaacaactgggcatct
tggaaaagtgctaaaagagagcatactcgtggcaaaaggatggttgagcgcaaattctga
gcgcctggggcttggaacactggaagatcaagatattcacgttcatcttccagcaggtgc
ggtgaataaagatgggccatctgctggaacaggattagcgtgtgctcttgttagtttagc
aacgaatattccactgagaagtgatgcagcagttactggtgaaatatcattgacgggtca
tgtgttaccgattggaggcgtcaaagaaaaggtgttggctgcccaacgagaaggtcttcg
tcgtgtagttctaccaaaatccaacgaagaagaatatttgaaaatggatgaagatattcg
actagaaatggatgttgtgctagctgaaaccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCCATTACCAGCGGGAGTATGC 359 401 1767 Antisense
GTATGCTTTGGATTGAGTGTCACGA 397 455 1786 Antisense
AATTCTGAGCGCCTGGGGCTTGGAA 264 177 1939 Antisense
AAGATATTCACGTTCATCTTCCAGC 37 157 1976 Antisense
TCATCTTCCAGCAGGTGCGGTGAAT 337 619 1989 Antisense
GATGGGCCATCTGCTGGAACAGGAT 137 407 2017 Antisense
TTAGCGTGTGCTCTTGTTAGTTTAG 347 681 2041 Antisense
TGACGGGTCATGTGTTACCGATTGG 178 569 2117 Antisense
TTGGCTGCCCAACGAGAAGGTCTTC 144 703 2161 Antisense
CGAGAAGGTCTTCGTCGTGTAGTTC 149 243 2173 Antisense
GGATGTTGTGCTAGCTGAAACCATT 254 509 2256 Antisense
Sequence Source Affymetrix Proprietary Database