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[193896_s_at]

Description F23B2.5_rc /REP_DB=WormBase Gene ID /WP=CE09585 /GEN=flp-1 /TR=SW:P41855 /GB=CAB05179.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=FMFRamide neuropeptide precursor
Cluster 6grp_total > 44      4grp_total > 04      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 61.5
(-1.9)
P 		59
(-1.9)
A 		13.4
(-3)
A 		267.6
(3)
P 		254
B 123.3
(-1.2)
P 		62
(-2.7)
A 		47.5
(-3)
A 		301
(3)
P 		254
C 81
(-1.2)
P 		29.9
(-2.5)
A 		7.3
(-3)
A 		259.4
(3)
P 		252
avr 88.6
(-1.4) 		50.3
(-2.3) 		22.7
(-3) 		276
(3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 26
(-1.8)
A 		7.8
(-3)
A 		102.6
(3)
P 		51.3
(-0.2)
A 		76.8
(1.4)
A 		24.1
(-2)
A 		95
B 95.9
(2.7)
P 		98.5
(3)
P 		95.3
(2.7)
M 		36.8
(-3)
A 		56.4
(-1.1)
A 		80.8
(1.3)
P 		62
C 38.4
(-0.4)
A 		79
(3)
M 		7.3
(-3)
A 		45.8
(0.2)
A 		53.7
(0.9)
A 		65
(1.8)
P 		72
avr 53.4
(-0.8) 		61.8
(1.3) 		68.4
(3) 		44.6
(-3) 		62.3
(1.5) 		56.6
(0) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 22.4
(0.2)
P 		12.8
(-1.4)
A 		3.5
(-3)
A 		39.2
(3)
P 		36
B 39.3
(0.2)
P 		15.3
(-2.5)
A 		11
(-3)
A 		64.1
(3)
P 		53
C 26.8
(0.5)
P 		8.6
(-2.1)
A 		2.6
(-3)
A 		43.7
(3)
P 		41
avr 29.5
(0.3) 		12.2
(-2.1) 		5.7
(-3) 		49
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.8
(-2.4)
A 		2.8
(-3)
A 		22.3
(2.7)
P 		13
(0)
A 		23.2
(3)
A 		5.9
(-2.1)
A 		20
B 33.4
(3)
P 		32.8
(2.8)
P 		23.2
(0.4)
M 		9.7
(-3)
A 		22.9
(0.3)
A 		30.1
(2.2)
P 		24
C 14.2
(0.3)
A 		24.1
(3)
M 		1.9
(-3)
A 		9.2
(-1)
A 		17.4
(1.2)
A 		21.8
(2.4)
P 		22
avr 17.5
(0.9) 		19.9
(2.3) 		15.8
(-0.1) 		10.6
(-3) 		21.2
(3) 		19.3
(1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193896_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28140
Sequence Type Exemplar sequence
Representative Public ID F23B2.5 NCBI
Target Description F23B2.5_rc /REP_DB=WormBase Gene ID /WP=CE09585 /GEN=flp-1 /TR=SW:P41855 /GB=CAB05179.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=FMFRamide neuropeptide precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F23B2.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F23B2.5 F23B2.5_rc /REP_DB=WormBase Gene ID /WP=CE09585 /GEN=flp-1 /TR=SW:P41855 /GB=CAB05179.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=FMFRamide neuropeptide precursor None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182277 11/11 Negative Strand Matching Probes A B 
NM_069191 11/11 Negative Strand Matching Probes A B 
NM_182278 11/11 Negative Strand Matching Probes A B 
SNAP00000024643 11/11 Negative Strand Matching Probes None
GENEFINDER00000024651 9/11 Negative Strand Matching Probes None
F23B2.5a 11/11 Negative Strand Matching Probes A B 
F23B2.5b 11/11 Negative Strand Matching Probes A B 
F23B2.5c 11/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9144699-9145964(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:193896_S_AT
ggaaatttggcttgcgggattcacgatcgaagttgtcgaatgagcgtccgaatctcaaga
agttaggatctgcagatcgttttccgaatctcaagaaatttggatcagcagcggcttttc
caaatctcaagaagttagggtcacttcgaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATTTGGCTTGCGGGATTCACG 480 525 30 Antisense
GGCTTGCGGGATTCACGATCGAAGT 443 537 38 Antisense
CGGGATTCACGATCGAAGTTGTCGA 496 243 44 Antisense
GTTGTCGAATGAGCGTCCGAATCTC 684 435 61 Antisense
ATGAGCGTCCGAATCTCAAGAAGTT 208 45 69 Antisense
ATCTCAAGAAGTTAGGATCTGCAGA 157 31 81 Antisense
GGATCTGCAGATCGTTTTCCGAATC 28 513 95 Antisense
GCAGATCGTTTTCCGAATCTCAAGA 412 311 101 Antisense
AGAAATTTGGATCAGCAGCGGCTTT 414 71 123 Antisense
GATCAGCAGCGGCTTTTCCAAATCT 519 421 132 Antisense
CAAGAAGTTAGGGTCACTTCGACCG 374 185 157 Antisense
Sequence Source Affymetrix Proprietary Database