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[193893_at] guanosine-3',5'-bis(diphosphate)-pyrophosphohydrolase like

Description ZK909.3 /REP_DB=WormBase Gene ID /WP=CE15477 /TR=O18307 /GB=CAB05030.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=guanosine-3prime,5prime-bis(diphosphate)-pyrophosphohydrolase like
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 23      6grp_total > 32      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2238
1 2 3 4 range
A 1266.1
(-1.8)
P 		2707.3
(2.3)
P 		2948.7
(3)
P 		857.3
(-3)
P 		2091
B 1425.8
(-0.9)
P 		2681.5
(3)
P 		2608.4
(2.8)
P 		766
(-3)
P 		1916
C 1530.2
(-0.7)
P 		2626.7
(2.3)
P 		2875.3
(3)
P 		711
(-3)
P 		2164
avr 1407.4
(-1.1) 		2671.8
(2.6) 		2810.8
(3) 		778.1
(-3) 		2033

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1396
1 2 3 4 5 6 range
A 2635.6
(3)
P 		2286.8
(1.4)
P 		2487.2
(2.3)
P 		2281.5
(1.4)
P 		1702.3
(-1.2)
P 		1313.4
(-3)
P 		1322
B 2589
(2.3)
P 		2063.7
(-0.5)
P 		2709.7
(3)
P 		2108.2
(-0.3)
P 		1902.4
(-1.4)
P 		1616.3
(-3)
P 		1093
C 2157.2
(2.5)
P 		2206.1
(3)
P 		2122.2
(2.1)
P 		2166.9
(2.6)
P 		1763.8
(-1.7)
P 		1639
(-3)
P 		567
avr 2460.6
(3) 		2185.5
(1.2) 		2439.7
(2.9) 		2185.5
(1.2) 		1789.5
(-1.3) 		1522.9
(-3) 		938
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 882
1 2 3 4 range
A 461
(0.1)
P 		587.7
(1.3)
P 		770.9
(3)
P 		125.5
(-3)
P 		645
B 454.7
(0.5)
P 		662.3
(3)
P 		604.4
(2.3)
P 		163.2
(-3)
P 		499
C 506.6
(-0.4)
P 		755.2
(1.3)
P 		1002.1
(3)
P 		119.9
(-3)
P 		882
avr 474.1
(0.1) 		668.4
(1.9) 		792.5
(3) 		136.2
(-3) 		656

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 485.8
(-1)
P 		813.3
(3)
P 		541.7
(-0.3)
P 		578.6
(0.1)
P 		513.7
(-0.6)
P 		319.8
(-3)
P 		494
B 900.8
(3)
P 		686.9
(-0.7)
P 		658
(-1.3)
P 		558.4
(-3)
P 		772.9
(0.8)
P 		602.7
(-2.2)
P 		342
C 799.6
(3)
P 		673.1
(0.9)
P 		540.1
(-1.3)
P 		435.8
(-3)
P 		570.8
(-0.8)
P 		548.7
(-1.1)
P 		364
avr 728.7
(3) 		724.4
(2.9) 		579.9
(-0.7) 		524.3
(-2.1) 		619.1
(0.2) 		490.4
(-3) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.691
Sequence Type Exemplar sequence
Representative Public ID ZK909.3 NCBI
Target Description ZK909.3 /REP_DB=WormBase Gene ID /WP=CE15477 /TR=O18307 /GB=CAB05030.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=guanosine-3prime,5prime-bis(diphosphate)-pyrophosphohydrolase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061207(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061207 NCBI Caenorhabditis elegans ZK909.3 (ZK909.3) mRNA, complete cds. 10/11 None
SNAP00000000350 ENSEMBL cdna:SNAP chromosome:CEL140:I:14961613:14963531:1 10/11 None
GENEFINDER00000000356 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14961658:14963531:1 9/11 None
ZK909.3 ENSEMBL cdna:known chromosome:CEL140:I:14961608:14963608:1 gene:ZK909.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14961543-14963462(+) 100.0 100.0
Public Domain and Genome References
Gene Title guanosine-3',5'-bis(diphosphate)-pyrophosphohydrolase like
Ensembl ZK909.3
Entrez Gene 191461 Entrez gene
SwissProt O18307 EMBL-EBI
WormBase CE30581 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20877.1.S1_AT similar to CG11900-PA cfa
CANINE_2:CFA.20877.2.S1_S_AT similar to CG11900-PA cfa
DROSOPHILA_2:1633159_AT dm
DROSGENOME1:150813_AT dm
HU35KSUBD:RC_AA287658_AT HD domain containing 3 hs
U133_X3P:HS.179882.1.S1_3P_AT HD domain containing 3 hs
HG-U133_PLUS_2:227008_AT HD domain containing 3 hs
HG-U133B:227008_AT HD domain containing 3 hs
HG-U95B:55738_AT HD domain containing 3 hs
HG-U95C:62908_R_AT HD domain containing 3 hs
MOUSE430_2:1428692_AT HD domain containing 3 mm
MOE430B:1428692_AT HD domain containing 3 mm
MG-U74BV2:115761_AT HD domain containing 3 mm
MG-U74CV2:130319_AT HD domain containing 3 mm
MOE430B:1452875_AT HD domain containing 3 mm
MOUSE430_2:1452875_AT HD domain containing 3 mm
RG-U34B:RC_AA849729_AT similar to RIKEN cDNA 1110033O09 (predicted) rn
RAE230A:1372762_AT similar to RIKEN cDNA 1110033O09 (predicted) rn
RAT230_2:1372762_AT similar to RIKEN cDNA 1110033O09 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05030 Hypothetical protein ZK909.3 [Caenorhabditis elegans] ref|NP_493608.2| ZK909.3 [Caenorhabditis elegans] 1.0E-131
blast CAB05030 Hypothetical protein ZK909.3 [Caenorhabditis elegans] ref|NP_493608.2| ZK909.3 [Caenorhabditis elegans] 1.0E-122
blast CAE72614 Hypothetical protein CBG19806 [Caenorhabditis briggsae] 1.0E-110
blast CAE72614 Hypothetical protein CBG19806 [Caenorhabditis briggsae] 1.0E-101
blast XP_624961 PREDICTED: similar to CG11900-PA [Apis mellifera] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR006674 EMBL-EBI Metal-dependent phosphohydrolase, HD subdomain 5.6E-7
Pfam IPR006674 EMBL-EBI Metal-dependent phosphohydrolase, HD subdomain 5.6E-7
Sequence
Target Sequence 
>C. ELEGANS:193893_AT
agacactgactacgacgatcttctcaaaaaaccagaaaaaccatttaatgaggaaactga
actagcggactggaatcttgtcctgaaagcaactgatttcgcagctcgtcgccatcgcca
tcagaagcgtaaggataatgcgaccccgtacattaatcatcccattgtgacacttgctgc
tgcagtacttcatgatgttgttgaggataccaagacgactccggaggaaattcagcaaga
atttggaaatgaagtgtttcaagttgtgaaggagtgtacagatgataagaatttggcaaa
agccgaaaggaagaagcttcaaattgagaattatggaaaacatagtcatcaagcaaagct
agtccatttggccgacaaattgtacaacttgcgtgatctggaacgcaaggcaccaatcgg
atgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACACTGACTACGACGATCTTCTC 101 73 114 Antisense
AAAGCAACTGATTTCGCAGCTCGTC 661 123 199 Antisense
GTCGCCATCGCCATCAGAAGCGTAA 326 475 221 Antisense
GTAAGGATAATGCGACCCCGTACAT 55 1 242 Antisense
CCCCGTACATTAATCATCCCATTGT 426 261 257 Antisense
TCCCATTGTGACACTTGCTGCTGCA 706 597 273 Antisense
GCTGCTGCAGTACTTCATGATGTTG 601 297 289 Antisense
GATACCAAGACGACTCCGGAGGAAA 333 425 319 Antisense
GCAAAGCTAGTCCATTTGGCCGACA 180 317 466 Antisense
TTGTACAACTTGCGTGATCTGGAAC 651 705 493 Antisense
GGAACGCAAGGCACCAATCGGATGG 77 531 513 Antisense
Sequence Source Affymetrix Proprietary Database